D030025P21Rik (RIKEN cDNA D030025P21 gene) - Rat Genome Database

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Gene: D030025P21Rik (RIKEN cDNA D030025P21 gene) Mus musculus
Analyze
Symbol: D030025P21Rik
Name: RIKEN cDNA D030025P21 gene
RGD ID: 2313365
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391284,922,576 - 84,926,529 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1284,922,543 - 84,926,529 (+)EnsemblGRCm39 Ensembl
GRCm381284,875,802 - 84,879,755 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1284,875,769 - 84,879,755 (+)EnsemblGRCm38mm10GRCm38
MGSCv371286,216,752 - 86,220,705 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1286,332,301 - 86,336,254 (+)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in D030025P21Rik
122 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:607
Count of miRNA genes:409
Interacting mature miRNAs:447
Transcripts:ENSMUST00000171853
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000171853
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1284,922,543 - 84,924,906 (+)Ensembl
GRCm38.p6 Ensembl1284,875,769 - 84,878,132 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1284,922,543 - 84,926,529 (+)Ensembl
GRCm38.p6 Ensembl1284,875,769 - 84,879,755 (+)Ensembl
RefSeq Acc Id: NR_028577
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391284,922,576 - 84,926,529 (+)NCBI
GRCm381284,875,802 - 84,879,755 (+)ENTREZGENE
MGSCv371286,216,752 - 86,220,705 (+)RGD
Celera1286,332,301 - 86,336,254 (+)RGD
cM Map12 ENTREZGENE
Sequence:
Promoters
RGD ID:8678802
Promoter ID:EPDNEW_M17432
Type:initiation region
Name:D030025P21Rik_1
Description:Mus musculus RIKEN cDNA D030025P21 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381284,875,747 - 84,875,807EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092130 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000220643 ENTREZGENE
MGD MGI:3698049 ENTREZGENE
NCBI Gene 100303738 ENTREZGENE
PhenoGen D030025P21Rik PhenoGen
RNAcentral URS000075BF2A RNACentral
UniProt Q8BQF7_MOUSE UniProtKB/TrEMBL
  Q8K2M6_MOUSE UniProtKB/TrEMBL