9130230L23Rik (RIKEN cDNA 9130230L23 gene)

Gene: 9130230L23Rik (RIKEN cDNA 9130230L23 gene) Mus musculus

Analyze

Symbol:

9130230L23Rik

Name:

RIKEN cDNA 9130230L23 gene

RGD ID:

2311282

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

PREDICTED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	66,145,271 - 66,161,628 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	66,136,701 - 66,161,628 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	65,987,928 - 66,004,285 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	65,979,358 - 66,004,285 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	66,379,167 - 66,395,524 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	66,267,063 - 66,283,420 (-)	NCBI		MGSCv36	mm8
Celera	5	63,290,775 - 63,291,380 (-)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	33.89	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in 9130230L23Rik
661 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	624
Count of miRNA genes:	393
Interacting mature miRNAs:	434
Transcripts:	ENSMUST00000067737, ENSMUST00000125452, ENSMUST00000132533, ENSMUST00000147882, ENSMUST00000165250
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301693	Sle6_m	systemic lupus erythematosus susceptibility 6 (mouse)			Not determined		5	8890693	87841837	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
4140990	Lgq6_m	late growth QTL 6 (mouse)			Not determined			32133234	100777931	Mouse
4141219	W10q16_m	weight 10 weeks QTL 16 (mouse)			Not determined			32133234	100777931	Mouse
10043995	Hbnr9_m	Heligmosomoides bakeri nematode resistance 9 (mouse)			Not determined		5	33488667	67488876	Mouse
1301845	Lxw4_m	lupus BXSB x NZW 4 (mouse)			Not determined		5	35694462	69694594	Mouse
11049561	Lmr24e_m	leishmaniasis resistance 24e (mouse)					5	35694462	69694594	Mouse
11049559	Lmr24c_m	leishmaniasis resistance 24c (mouse)					5	35694462	69694594	Mouse
11049558	Lmr24b_m	leishmaniasis resistance 24b (mouse)					5	35694462	69694594	Mouse
1301223	Hdlq7_m	HDL QTL 7 (mouse)			Not determined		5	35854568	69854714	Mouse
13464252	Ahl10_m	age related hearing loss, early onset 10 (mouse)					5	35854568	69854714	Mouse
4141647	Hrvhf1_m	heart rate variability, high frequency 1 (mouse)			Not determined			36433423	70433423	Mouse
1301170	Lith13_m	lithogenic gene 13 (mouse)			Not determined		5	36494486	70494598	Mouse
1301524	Lmb2_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		5	37581488	112465722	Mouse
13464246	Ahl11_m	age related hearing loss, early onset 11 (mouse)					5	37643777	71643896	Mouse
1300951	Gbvq1_m	gallstone bladder volume QTL 1 (mouse)			Not determined		5	38111681	72111798	Mouse
13464245	Ahl12_m	age related hearing loss, early onset 12 (mouse)					5	38111681	72111798	Mouse
1301698	Pcfm4_m	periosteal circumference and femur length 4 (mouse)			Not determined		5	44585843	78585965	Mouse
13207584	Mwmlpt4_m	Morris water maze latency to platform, training, 4 (mouse)					5	46322606	80322606	Mouse
13207588	Mwmlpa4_m	Morris water maze latency to platform, all, 4 (mouse)					5	46322606	80322606	Mouse
14746981	Manh57_m	mandible shape 57 (mouse)					5	47169742	81169742	Mouse
11041665	Lmr24_m	leishmaniasis resistance 24 (mouse)					5	52694462	107321041	Mouse
11041899	Lmr24a_m	leishmaniasis resistance 24a (mouse)					5	52694462	107321041	Mouse
4142064	Tmc1m4_m	Tmc1 modifier 4 (mouse)			Not determined		5	54500177	127001072	Mouse
1301243	Bmd2_m	bone mineral density 2 (mouse)			Not determined		5	55388334	100455525	Mouse
4142317	Rgcs1_m	retinal ganglion cell susceptible 1 (mouse)			Not determined			55388334	108762627	Mouse
13464248	Ahl13_m	age related hearing loss, early onset 13 (mouse)					5	55645874	89645995	Mouse
10043962	Obq27_m	obesity QTL 27 (mouse)			Not determined		5	56285655	90285655	Mouse
10044005	Ahl7_m	age related hearing loss 7 (mouse)			Not determined		5	58330502	92330641	Mouse
11040591	Lmr3c_m	leishmaniasis resistance 3c (mouse)					5	59602801	93602980	Mouse
11040592	Lmr3d_m	leishmaniasis resistance 3d (mouse)					5	59602801	93602980	Mouse
11040589	Lmr3a_m	leishmaniasis resistance 3a (mouse)					5	59602801	93602980	Mouse
11040590	Lmr3b_m	leishmaniasis resistance 3b (mouse)					5	59602801	93602980	Mouse
1301843	Listr1_m	listeriosis resistance 1 (mouse)			Not determined		5	60246081	94246203	Mouse
13464247	Ahl14_m	age related hearing loss, early onset 14 (mouse)					5	60403062	94403160	Mouse
11252124	Modvl6_m	modifier of vacuolated lens 6 (mouse)					5	62650568	96650688	Mouse
4142428	Modvl1_m	modifier of vacuolated lens 1 (mouse)			Not determined			62650568	96650688	Mouse
1301010	ahl2_m	age related hearing loss 2 (mouse)			Not determined		5	62650568	96650688	Mouse
13464250	Ahl15_m	age related hearing loss, early onset 15 (mouse)					5	62650568	96650688	Mouse
10045972	Tir5_m	trypanosome infection response 5 (mouse)			Not determined		5	63705442	104387065	Mouse
11049560	Lmr24d_m	leishmaniasis resistance 24d (mouse)					5	64374877	98374996	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_027961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK033717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK078705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK166951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC096478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC127159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000165250 ⟹ ENSMUSP00000131673

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	66,145,618 - 66,157,561 (-)	Ensembl
GRCm38.p6 Ensembl	5	65,988,275 - 66,000,218 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000201302

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	66,158,406 - 66,159,134 (-)	Ensembl
GRCm38.p6 Ensembl	5	66,001,063 - 66,001,791 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000201351 ⟹ ENSMUSP00000143918

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	66,145,271 - 66,161,628 (-)	Ensembl
GRCm38.p6 Ensembl	5	65,987,928 - 66,004,285 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000201386

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	66,157,021 - 66,161,628 (-)	Ensembl
GRCm38.p6 Ensembl	5	65,999,678 - 66,004,285 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000201562

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	66,136,701 - 66,147,350 (-)	Ensembl
GRCm38.p6 Ensembl	5	65,979,358 - 65,990,007 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000202278

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	66,146,433 - 66,148,455 (-)	Ensembl
GRCm38.p6 Ensembl	5	65,989,090 - 65,991,112 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000202773

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	66,147,469 - 66,158,676 (-)	Ensembl
GRCm38.p6 Ensembl	5	65,990,126 - 66,001,333 (-)	Ensembl

RefSeq Acc Id:

NR_027961

RefSeq Status:

PREDICTED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	66,145,271 - 66,161,628 (-)	NCBI
GRCm38	5	65,987,928 - 66,004,285 (-)	ENTREZGENE
MGSCv37	5	66,379,167 - 66,395,524 (-)	RGD
Celera	5	63,290,775 - 63,291,380 (-)	RGD
cM Map	5		ENTREZGENE

Sequence:

show sequence

AGAAAAGAAGGCAGAGCACCAGGTGGCAAGATCTGGGTGTGGCGAAAACTGCCTAGAGGGATAG
AAGCCATCTAAGCCCCAGGCCATCTCAGCAAGGCTGCCAACAGGCTGCTGACACTGGACATTCT
TCAACCTCTGGTGATTCCGAAGCTGTGAAAGCTCAAGGGACAGCTGGGAGAGTGCACTGTGCCT
ACGAAGGGGCTGCTGGTCATTTCTTGGGCCTGTTAGGATTTCTCAAGAAAAAGGCTGGTAGGCA
TCTTCAAACCTCAGTTCCCTCTGCAGAGGTAAAAGAGGAAGCAAAGATACGGTTCTAAGGTTGC
AGCCCACACTGTAAAGTGAACATGTGGTGACTGGATCCGGGTTCCTACTAAGAACATGGACTAG
GAAAAAGACCCTCATGAGAAGAGTCTAGCAGGAAGAAAATGGAAAGGTCATCTCTATCCAAATC
TCAAGAGCTATGATTGGCTGAGCTAGCCCTGGGGTGATCCGTGAAATGAAGGGAAACCTGACTC
CAATAACTGCTGCCAGGAGAAGCCTTGGGGGTGGAAGCCAAGCGTTCAAATAAGAGGCGAAGTT
GAGCAAGCATGGCAGTCCTCCAGCATTGGAAGGGACCAGATGCACCTGCCCAGCCTACCCCAGG
AACCAACCTGCTGTTACTCCTGGTTGATTGATCCCAGAGCTGATGGTCAGGCCCATGACTGGAC
TTCTTGTACCATACATGAACCCAGAGAAGACTTCTGCTTCTCACTCAAAGTTGTATCTACTGTG
GGAGGGTCTCACGATGTAGTCCAGACTGACCTCCGGCTTACGAAGCTCCTGCCTCCACTTCCGG
TGTGTTGCAATTACAGGACTCTCAGGGTACAGGACTCAAGAGTCACATGTCAGAGGCCCAAGAT
TTCAATTAGCTTCGGCTTCTTATCAGCCTGCTCACCTCGGGACCTGCTGCGTCCTAGTCCGCAA
ATGGGTTACAGAGAAAGGAGGCTCAAGCTACACTCTTCAGGACAGAGGCAGCACGGACTCAGCC
AGACATGGAAGTTTCTAGACAGAGACCGTCAAAGTGCTGTTCTCCAAACCCAAAGAAAAAGATG
GCTTCCATTGTGCCTGTGAAAATACTGAATCGTTCACCGTCTTAAGTCACGTCTGGTTCCTTCT
CCTTGCCCGGTGTCTTGCTCCTCTCGCTGCTCCACCTCCCGTTCCTCCTTCCTTCCATTTCGAT
CCTGGCTCCCACCAAGGTTCTCACACTCTAGAGTCCATGTATTTTTACCAGCTAAAGTCTGATT
AGTGCAAACCCTAGCCATATGGAATATGCTTTTCTAAACCAAAGTCAATTCTTCCATCTGCTGG
GTCTCTTGAATGACGCACTCCTCGTTTGACTTGGGAATGTTAAAGTCCTGGGAATCCTGATCTT
TGTCCTTTCAAGTAATAAAAAGAGGACAAATTTTCTATTAATCCTC

hide sequence

Protein Sequences


GenBank Protein	BAC28444	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

ENSMUSP00000131673 ⟸ ENSMUST00000165250

RefSeq Acc Id:

ENSMUSP00000143918 ⟸ ENSMUST00000201351

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8CC80-F1-model_v2	AlphaFold	Q8CC80	1-163	view protein structure

Promoters

RGD ID:

6886792

Promoter ID:

EPDNEW_M6847

Type:

multiple initiation site

Name:

9130230L23Rik_2

Description:

Mus musculus RIKEN cDNA 9130230L23 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M6848

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	65,991,240 - 65,991,300	EPDNEW

RGD ID:

6886794

Promoter ID:

EPDNEW_M6848

Type:

single initiation site

Name:

9130230L23Rik_1

Description:

Mus musculus RIKEN cDNA 9130230L23 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M6847

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	66,004,285 - 66,004,345	EPDNEW

RGD ID:

6836896

Promoter ID:

MM_KWN:42414

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_4Hour

Transcripts:

NR_027961, OTTMUST00000052850

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	5	66,395,586 - 66,396,452 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000054598	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000201351	ENTREZGENE
MGD	MGI:3041166	ENTREZGENE
NCBI Gene	231253	ENTREZGENE
PhenoGen	9130230L23Rik	PhenoGen
RNAcentral	URS000075F125	RNACentral
UniProt	Q8CC80_MOUSE	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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