Gstp-ps (glutathione S-transferase, pi, pseudogene) - Rat Genome Database

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Gene: Gstp-ps (glutathione S-transferase, pi, pseudogene) Mus musculus
Analyze
No known orthologs.
Symbol: Gstp-ps
Name: glutathione S-transferase, pi, pseudogene
RGD ID: 2308220
MGI Page MGI
Description: Predicted to enable several functions, including anion binding activity; dinitrosyl-iron complex binding activity; and glutathione peroxidase activity. Predicted to be involved in several processes, including fatty acid metabolic process; negative regulation of macromolecule biosynthetic process; and negative regulation of signal transduction. Predicted to be located in cytosol and mitochondrion. Predicted to be part of TRAF2-GSTP1 complex. Human ortholog(s) of this gene implicated in several diseases, including allergic disease (multiple); carcinoma (multiple); hematologic cancer (multiple); reproductive organ cancer (multiple); and respiratory system disease (multiple). Orthologous to human GSTP1 (glutathione S-transferase pi 1); INTERACTS WITH 1,4-dioxane; epoxiconazole.
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: 100042625; glutathione S-transferase P 2-like; Gm37208; Gm3934; predicted gene 3934
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,758,036 - 191,762,461 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,758,120 - 191,758,750 (-)EnsemblGRCm39 Ensembl
GRCm381192,073,736 - 192,076,444 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1192,073,820 - 192,074,450 (-)EnsemblGRCm38mm10GRCm38
MGSCv371193,897,636 - 193,898,333 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,897,612 - 193,898,405 (-)NCBIMGSCv36mm8
Celera1198,966,720 - 198,967,417 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14681479   PMID:30153066  


Genomics

Variants

.
Variants in Gstp-ps
162 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1180832317191851043Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1180832317191851043Mouse
14700797Mencq2_mmeniscus calcification QTL 2 (mouse)1191583112192212308Mouse

Markers in Region
PMC31882P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381192,073,911 - 192,074,225UniSTSGRCm38
MGSCv371193,897,792 - 193,898,106UniSTSGRCm37
Celera1198,966,876 - 198,967,190UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map19AUniSTS
cM Map1105.0UniSTS
cM Map190.0UniSTS
cM Map190.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036155425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC175315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000195526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1191,758,120 - 191,758,750 (-)Ensembl
GRCm38.p6 Ensembl1192,073,820 - 192,074,450 (-)Ensembl
RefSeq Acc Id: XM_036155425   ⟹   XP_036011318
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391191,758,036 - 191,762,461 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036011318 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_036011318   ⟸   XM_036155425
- UniProtKB: A0A494BAW2 (UniProtKB/TrEMBL)

Promoters
RGD ID:6817795
Promoter ID:MM_KWN:3325
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:XM_001478655_GM3934
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361193,898,001 - 193,898,501 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3782108 AgrOrtholog
Ensembl Genes ENSMUSG00000103653 Ensembl
MGD MGI:3782108 ENTREZGENE
NCBI Gene 100042625 ENTREZGENE
PhenoGen Gstp-ps PhenoGen
UniProt A0A494BAW2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-10-04 Gstp-ps  glutathione S-transferase, pi, pseudogene  Gm3934  predicted gene 3934  Symbol and/or name change 5135510 APPROVED