Rbmyf1 (RNA binding motif protein Y-linked family member 1) - Rat Genome Database

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Gene: Rbmyf1 (RNA binding motif protein Y-linked family member 1) Mus musculus
Analyze
No known orthologs.
Symbol: Rbmyf1
Name: RNA binding motif protein Y-linked family member 1
RGD ID: 2308081
MGI Page MGI
Description: Predicted to enable RNA binding activity. Predicted to be involved in male gonad development and positive regulation of mRNA splicing, via spliceosome. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to human RBMY1B (RNA binding motif protein Y-linked family 1 member B).
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: 100042849; Gm4064; RNA binding motif protein, Y chromosome, family 1 member; uncharacterized protein LOC100042849
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39Y2,785,165 - 2,796,224 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblY2,785,165 - 2,796,205 (-)EnsemblGRCm39 Ensembl
GRCm38Y2,785,165 - 2,796,224 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblY2,785,165 - 2,796,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv37Y2,041,436 - 2,052,117 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36Y2,041,075 - 2,052,134 (-)NCBIMGSCv36mm8
Cytogenetic MapYpterNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

Markers in Region
G65761  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapYA1UniSTS
RbmY1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapYA1UniSTS
Rbmy1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapYA1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000187482   ⟹   ENSMUSP00000140512
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblY2,785,165 - 2,796,205 (-)Ensembl
GRCm38.p6 EnsemblY2,785,165 - 2,796,205 (-)Ensembl
RefSeq Acc Id: NM_001270518   ⟹   NP_001257447
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39Y2,785,165 - 2,796,224 (-)NCBI
GRCm38Y2,785,165 - 2,796,224 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001257447 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000140512
  ENSMUSP00000140512.2
Reference Protein Sequences
RefSeq Acc Id: NP_001257447   ⟸   NM_001270518
- UniProtKB: A0A087WR82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000140512   ⟸   ENSMUST00000187482
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A087WR82-F1-model_v2 AlphaFold A0A087WR82 1-380 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3782239 AgrOrtholog
Ensembl Genes ENSMUSG00000102053 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000187482 ENTREZGENE
  ENSMUST00000187482.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report mmu:100042849 UniProtKB/TrEMBL
MGD MGI:3782239 ENTREZGENE
NCBI Gene 100042849 ENTREZGENE
PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER A1-RELATED UniProtKB/TrEMBL
  TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PhenoGen Rbmyf1 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A087WR82 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-12 Rbmyf1  RNA binding motif protein Y-linked family member 1  Gm4064  predicted gene 4064  Symbol and/or name updated 27372883 PROVISIONAL