Or6c6b (olfactory receptor family 6 subfamily C member 6B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Or6c6b (olfactory receptor family 6 subfamily C member 6B) Mus musculus
Analyze
No known orthologs.
Symbol: Or6c6b
Name: olfactory receptor family 6 subfamily C member 6B
RGD ID: 2307501
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in lipid droplet and plasma membrane. Orthologous to human OR6C6 (olfactory receptor family 6 subfamily C member 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000044537; GA_x6K02T2PULF-10991899-10992843; Gm9792; MOR110-; MOR110-11P; olfactory receptor 779; olfactory receptor 779, pseudogene 1; olfactory receptor 782 pseudogene; olfactory receptor MOR110-11P; Olfr779; Olfr779-ps1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910129,147,034 - 129,147,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10129,147,049 - 129,147,977 (+)EnsemblGRCm39 Ensembl
GRCm3810129,311,165 - 129,312,108 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10129,311,180 - 129,312,108 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,748,221 - 128,749,164 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610128,714,114 - 128,715,057 (+)NCBIMGSCv36mm8
Celera10131,698,991 - 131,699,934 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:116
Interacting mature miRNAs:118
Transcripts:ENSMUST00000069063
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
12911219Frct3b_mfear conditioning traits 3b (mouse)10127675574129466996Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
12904000Opfaq7_mopen field activity QTL 7 (mouse)10127746318129466375Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122785970129466996Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125633671129466375Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122785970129466996Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
12911221Frct3d_mfear conditioning traits 3d (mouse)10127675574129466996Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122785970129466996Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000069063   ⟹   ENSMUSP00000089616
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10129,147,378 - 129,147,767 (+)Ensembl
GRCm38.p6 Ensembl10129,311,509 - 129,311,898 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222301   ⟹   ENSMUSP00000152224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10129,147,049 - 129,147,977 (+)Ensembl
GRCm38.p6 Ensembl10129,311,180 - 129,312,108 (+)Ensembl
Protein Sequences
Protein RefSeqs NP_001416606 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAS99802 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000152224   ⟸   ENSMUST00000222301
RefSeq Acc Id: ENSMUSP00000089616   ⟸   ENSMUST00000069063

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PUS9-F1-model_v2 AlphaFold E9PUS9 1-130 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030613 AgrOrtholog
Ensembl Genes ENSMUSG00000044537 Ensembl, ENTREZGENE
MGD MGI:3030613 ENTREZGENE
NCBI Gene 544749 ENTREZGENE
PhenoGen Or6c6b PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-21 Or6c6b  olfactory receptor family 6 subfamily C member 6B  Olfr779  olfactory receptor 779  Symbol and/or name change 5135510 APPROVED
2015-05-12 Olfr779  olfactory receptor 779  Olfr779  olfactory receptor 779  Data merged from RGD:1620529 737654 PROVISIONAL
2014-09-17 Olfr779  olfactory receptor 779  Gm9792  predicted gene 9792  Symbol and/or name change 5135510 APPROVED