Amy2a4 (amylase 2a4) - Rat Genome Database

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Gene: Amy2a4 (amylase 2a4) Mus musculus
Analyze
No known orthologs.
Symbol: Amy2a4
Name: amylase 2a4
RGD ID: 2307070
MGI Page MGI
Description: Predicted to enable alpha-amylase activity; calcium ion binding activity; and chloride ion binding activity. Predicted to be located in extracellular space. Orthologous to several human genes including AMY2A (amylase alpha 2A) and AMY2B (amylase alpha 2B); PARTICIPATES IN starch and sucrose metabolic pathway; INTERACTS WITH sodium dichromate.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: 1,4-alpha-D-glucan glucanohydrolase; Amy2; Amy2a; amylase 2a4, pancreatic; ENSMUSG00000074267; mAmy2-; mAmy2-3; PA; Pancreatic alpha-amylase
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393113,187,153 - 113,198,765 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3113,187,159 - 113,198,765 (-)EnsemblGRCm39 Ensembl
GRCm383113,279,837 - 113,291,449 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3113,279,843 - 113,291,449 (-)EnsemblGRCm38mm10GRCm38
MGSCv373113,082,755 - 113,094,367 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363113,082,755 - 113,094,367 (-)NCBIMGSCv36mm8
Celera3119,914,363 - 119,925,556 (-)NCBICelera
Cytogenetic Map3F3NCBI
cM Map349.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2987507   PMID:2989529   PMID:3877171   PMID:6091898   PMID:6157477   PMID:6176715   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932  
PMID:16141072   PMID:16141073   PMID:17223109  


Genomics

Variants

.
Variants in Amy2a4
303 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:21
Interacting mature miRNAs:21
Transcripts:ENSMUST00000179568
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1357599msrvh1_mmodifier of susceptibility to renal vascular hypertrophy/hyperplasia 1 (mouse)Not determined3107376936115624197Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse

Markers in Region
Amy2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F3UniSTS
cM Map350.0UniSTS
cM Map353.7UniSTS
cM Map3 UniSTS
Amy2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001160150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000179568   ⟹   ENSMUSP00000137025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3113,187,159 - 113,198,765 (-)Ensembl
GRCm38.p6 Ensembl3113,279,843 - 113,291,449 (-)Ensembl
RefSeq Acc Id: NM_001160150   ⟹   NP_001153622
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393113,187,153 - 113,198,765 (-)NCBI
GRCm383113,279,837 - 113,291,449 (-)ENTREZGENE
MGSCv373113,082,755 - 113,094,367 (-)RGD
Celera3119,914,363 - 119,925,556 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001153622 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000096264.4
  ENSMUSP00000096270.4
  ENSMUSP00000136894.2
  ENSMUSP00000137025
  ENSMUSP00000137025.2
RefSeq Acc Id: NP_001153622   ⟸   NM_001160150
- Peptide Label: precursor
- UniProtKB: Q61296 (UniProtKB/Swiss-Prot),   Q61295 (UniProtKB/Swiss-Prot),   Q4VBW6 (UniProtKB/Swiss-Prot),   Q64301 (UniProtKB/Swiss-Prot),   P00688 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137025   ⟸   ENSMUST00000179568

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P00688-F1-model_v2 AlphaFold P00688 1-508 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3711258 AgrOrtholog
Ensembl Genes ENSMUSG00000074268 UniProtKB/Swiss-Prot
  ENSMUSG00000093931 UniProtKB/Swiss-Prot
  ENSMUSG00000096569 UniProtKB/Swiss-Prot
  ENSMUSG00000096770 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000098667.5 UniProtKB/Swiss-Prot
  ENSMUST00000098673.5 UniProtKB/Swiss-Prot
  ENSMUST00000179314.3 UniProtKB/Swiss-Prot
  ENSMUST00000179568 ENTREZGENE
  ENSMUST00000179568.3 UniProtKB/Swiss-Prot
Gene3D-CATH Glycosidases UniProtKB/Swiss-Prot
  Golgi alpha-mannosidase II UniProtKB/Swiss-Prot
InterPro A-amylase/branching_C UniProtKB/Swiss-Prot
  A-amylase_C UniProtKB/Swiss-Prot
  Alpha_amylase UniProtKB/Swiss-Prot
  Glyco_hydro_13_cat_dom UniProtKB/Swiss-Prot
  Glyco_hydro_b UniProtKB/Swiss-Prot
  Glycoside_hydrolase_SF UniProtKB/Swiss-Prot
KEGG Report mmu:100043684 UniProtKB/Swiss-Prot
  mmu:100043686 UniProtKB/Swiss-Prot
  mmu:100043688 UniProtKB/Swiss-Prot
  mmu:109959 UniProtKB/Swiss-Prot
MGD MGI:3711258 ENTREZGENE
NCBI Gene 100043684 ENTREZGENE
PANTHER ALPHA-AMYLASE UniProtKB/Swiss-Prot
  PANCREATIC ALPHA-AMYLASE UniProtKB/Swiss-Prot
Pfam Alpha-amylase UniProtKB/Swiss-Prot
  Alpha-amylase_C UniProtKB/Swiss-Prot
PhenoGen Amy2a4 PhenoGen
PRINTS ALPHAAMYLASE UniProtKB/Swiss-Prot
SMART Aamy UniProtKB/Swiss-Prot
  Aamy_C UniProtKB/Swiss-Prot
Superfamily-SCOP (Trans)glycosidases UniProtKB/Swiss-Prot
  Glycosyl hydrolase domain UniProtKB/Swiss-Prot
UniProt AM2A5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q4VBW6 ENTREZGENE
  Q61295 ENTREZGENE
  Q61296 ENTREZGENE
  Q64301 ENTREZGENE
UniProt Secondary Q4VBW6 UniProtKB/Swiss-Prot
  Q61295 UniProtKB/Swiss-Prot
  Q61296 UniProtKB/Swiss-Prot
  Q64301 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Amy2a4  amylase 2a4  Amy2a4  amylase 2a4, pancreatic  Symbol and/or name change 5135510 APPROVED