USF1P1 (upstream transcription factor 1 pseudogene 1) - Rat Genome Database

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Gene: USF1P1 (upstream transcription factor 1 pseudogene 1) Homo sapiens
Analyze
Symbol: USF1P1
Name: upstream transcription factor 1 pseudogene 1
RGD ID: 2306325
HGNC Page HGNC:23773
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: USF1P
Related Functional Gene: USF1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382133,334,613 - 33,335,101 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2133,334,596 - 33,335,097 (+)EnsemblGRCh38hg38GRCh38
GRCh372134,706,919 - 34,707,407 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362134,706,919 - 34,707,406 (+)NCBINCBI36Build 36hg18NCBI36
Celera2119,897,005 - 19,897,492 (+)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2120,175,748 - 20,176,235 (+)NCBIHuRef
CHM1_12134,269,285 - 34,269,772 (+)NCBICHM1_1
T2T-CHM13v2.02131,706,857 - 31,707,345 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:53
Interacting mature miRNAs:54
Transcripts:ENST00000451645
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
ECD14982  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,706,921 - 34,707,402UniSTSGRCh37
GRCh371161,011,123 - 161,012,646UniSTSGRCh37
Build 362133,628,791 - 33,629,272RGDNCBI36
Celera1134,078,391 - 134,079,914UniSTS
Celera2119,897,007 - 19,897,488RGD
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map1q22-q23UniSTS
HuRef1132,369,058 - 132,370,581UniSTS
HuRef2120,175,750 - 20,176,231UniSTS
REN84834  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,705,051 - 34,705,308UniSTSGRCh37
Build 362133,626,921 - 33,627,178RGDNCBI36
Celera2119,895,137 - 19,895,394RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,173,879 - 20,174,136UniSTS
REN84835  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,705,301 - 34,705,547UniSTSGRCh37
Build 362133,627,171 - 33,627,417RGDNCBI36
Celera2119,895,387 - 19,895,633RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,174,129 - 20,174,375UniSTS
REN84836  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,705,524 - 34,705,776UniSTSGRCh37
Build 362133,627,394 - 33,627,646RGDNCBI36
Celera2119,895,610 - 19,895,862RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,174,352 - 20,174,604UniSTS
REN84837  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,705,671 - 34,705,918UniSTSGRCh37
Build 362133,627,541 - 33,627,788RGDNCBI36
Celera2119,895,757 - 19,896,004RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,174,499 - 20,174,746UniSTS
REN84838  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,706,224 - 34,706,469UniSTSGRCh37
Build 362133,628,094 - 33,628,339RGDNCBI36
Celera2119,896,310 - 19,896,555RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,175,053 - 20,175,298UniSTS
REN84839  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,706,445 - 34,706,708UniSTSGRCh37
Build 362133,628,315 - 33,628,578RGDNCBI36
Celera2119,896,531 - 19,896,794RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,175,274 - 20,175,537UniSTS
REN84840  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,706,701 - 34,706,934UniSTSGRCh37
Build 362133,628,571 - 33,628,804RGDNCBI36
Celera2119,896,787 - 19,897,020RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,175,530 - 20,175,763UniSTS
REN84841  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,706,926 - 34,707,182UniSTSGRCh37
Build 362133,628,796 - 33,629,052RGDNCBI36
Celera2119,897,012 - 19,897,268RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,175,755 - 20,176,011UniSTS
REN84842  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,707,179 - 34,707,435UniSTSGRCh37
Build 362133,629,049 - 33,629,305RGDNCBI36
Celera2119,897,265 - 19,897,521RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,176,008 - 20,176,264UniSTS
REN84843  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,707,412 - 34,707,656UniSTSGRCh37
Build 362133,629,282 - 33,629,526RGDNCBI36
Celera2119,897,498 - 19,897,742RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,176,241 - 20,176,485UniSTS
REN84844  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372134,707,654 - 34,707,902UniSTSGRCh37
Build 362133,629,524 - 33,629,772RGDNCBI36
Celera2119,897,740 - 19,897,988RGD
Cytogenetic Map21q22.11UniSTS
HuRef2120,176,483 - 20,176,731UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 9 64 21 4 211 4 15 5 7 4 98 55 8 9
Below cutoff 573 767 567 215 687 164 891 327 703 121 559 596 53 343 475 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000451645
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2133,334,596 - 33,335,097 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC USF1P1 COSMIC
Ensembl Genes ENSG00000226501 Ensembl, ENTREZGENE
GTEx ENSG00000226501 GTEx
HGNC ID HGNC:23773 ENTREZGENE
Human Proteome Map USF1P1 Human Proteome Map
NCBI Gene 100151645 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 USF1P1  upstream transcription factor 1 pseudogene 1  USF1P  upstream transcription factor 1 pseudogene  Symbol and/or name change 5135510 APPROVED