RPS27AP11 (RPS27A pseudogene 11) - Rat Genome Database

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Gene: RPS27AP11 (RPS27A pseudogene 11) Homo sapiens
Analyze
Symbol: RPS27AP11
Name: RPS27A pseudogene 11
RGD ID: 2305344
HGNC Page HGNC:36126
Description: INTERACTS WITH chloropicrin
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ribosomal protein S27a pseudogene 11; RPS27A_4_740
Related Functional Gene: RPS27A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386113,581,463 - 113,581,999 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6113,581,501 - 113,581,947 (+)EnsemblGRCh38hg38GRCh38
GRCh376113,902,665 - 113,903,201 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366114,009,356 - 114,009,907 (+)NCBINCBI36Build 36hg18NCBI36
Celera6114,644,160 - 114,644,696 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6111,478,921 - 111,479,457 (+)NCBIHuRef
CHM1_16114,165,276 - 114,165,812 (+)NCBICHM1_1
T2T-CHM13v2.06114,765,439 - 114,765,975 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
chloropicrin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:87
Interacting mature miRNAs:90
Transcripts:ENST00000402798
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 9 1 1
Low 1036 1034 732 152 713 87 2199 587 1054 142 702 846 65 655 1434
Below cutoff 1148 1530 764 301 805 216 1702 1321 2170 178 514 538 91 489 1150 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000402798
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6113,581,501 - 113,581,947 (+)Ensembl
RefSeq Acc Id: XM_001127860
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 366114,009,356 - 114,009,907 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC RPS27AP11 COSMIC
Ensembl Genes ENSG00000218208 Ensembl, ENTREZGENE
GTEx ENSG00000218208 GTEx
HGNC ID HGNC:36126 ENTREZGENE
Human Proteome Map RPS27AP11 Human Proteome Map
NCBI Gene 728590 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-11 RPS27AP11  RPS27A pseudogene 11  RPS27AP11  ribosomal protein S27a pseudogene 11  Symbol and/or name change 19259463 PROVISIONAL