Scarna3b (small Cajal body-specific RNA 3B) - Rat Genome Database

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Gene: Scarna3b (small Cajal body-specific RNA 3B) Mus musculus
Analyze
Symbol: Scarna3b
Name: small Cajal body-specific RNA 3B
RGD ID: 2303926
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PROVISIONAL
Previously known as: MBI-10; MBI-100
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391280,438,388 - 80,438,511 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1280,438,388 - 80,438,511 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1280,438,387 - 80,438,525 (-)EnsemblGRCm39 Ensembl
GRCm381280,391,614 - 80,391,737 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1280,391,614 - 80,391,737 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1280,391,613 - 80,391,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv371281,492,601 - 81,492,724 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1281,856,909 - 81,857,032 (-)NCBICelera
Cytogenetic Map12C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11387227   PMID:11424213  


Genomics

Variants

.
Variants in Scarna3b
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSMUST00000157533
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
1301868Fbgl1_mfasting blood glucose 1 (mouse)Not determined127904016483162211Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000157533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1280,391,613 - 80,391,751 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,438,388 - 80,438,511 (-)Ensembl
GRCm38.p6 Ensembl1280,391,614 - 80,391,737 (-)Ensembl
RefSeq Acc Id: ENSMUST00020182423
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,438,387 - 80,438,525 (-)Ensembl
RefSeq Acc Id: NR_028544
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391280,438,388 - 80,438,511 (-)NCBI
GRCm381280,391,614 - 80,391,737 (-)ENTREZGENE
MGSCv371281,492,601 - 81,492,724 (-)RGD
Celera1281,856,909 - 81,857,032 (-)RGD
cM Map12 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088158 Ensembl
  ENSMUSG00000112285 Ensembl, ENTREZGENE
  ENSMUSG00002076250 Ensembl
Ensembl Transcript ENSMUST00000218411 ENTREZGENE
MGD MGI:3819486 ENTREZGENE
NCBI Gene 100217447 ENTREZGENE
PhenoGen Scarna3b PhenoGen
RNAcentral URS0000166D62 RNACentral