Snord57 (small nucleolar RNA, C/D box 57) - Rat Genome Database

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Gene: Snord57 (small nucleolar RNA, C/D box 57) Mus musculus
Analyze
Symbol: Snord57
Name: small nucleolar RNA, C/D box 57
RGD ID: 2302625
MGI Page MGI
Description: INTERACTS WITH buta-1,3-diene; trovafloxacin; 17beta-estradiol (ortholog)
Type: snorna
RefSeq Status: PROVISIONAL
Previously known as: MBII-4; MBII-434
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,119,946 - 130,120,008 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,119,936 - 130,120,007 (+)EnsemblGRCm39 Ensembl
GRCm382130,278,026 - 130,278,088 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,278,016 - 130,278,087 (+)EnsemblGRCm38mm10GRCm38
MGSCv372130,103,762 - 130,103,824 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera2131,502,433 - 131,502,495 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11387227   PMID:11424213   PMID:27820699  


Genomics

Comparative Map Data
Snord57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,119,946 - 130,120,008 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,119,936 - 130,120,007 (+)EnsemblGRCm39 Ensembl
GRCm382130,278,026 - 130,278,088 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,278,016 - 130,278,087 (+)EnsemblGRCm38mm10GRCm38
MGSCv372130,103,762 - 130,103,824 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera2131,502,433 - 131,502,495 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.2NCBI
SNORD57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38202,656,939 - 2,657,010 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl202,656,939 - 2,657,010 (+)EnsemblGRCh38hg38GRCh38
GRCh37202,637,585 - 2,637,656 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36202,585,585 - 2,585,656 (+)NCBINCBI36Build 36hg18NCBI36
Build 34202,585,584 - 2,585,656NCBI
Celera202,702,048 - 2,702,119 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef202,586,813 - 2,586,884 (+)NCBIHuRef
CHM1_1202,637,992 - 2,638,063 (+)NCBICHM1_1
T2T-CHM13v2.0202,687,406 - 2,687,477 (+)NCBIT2T-CHM13v2.0
Snord57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83137,933,643 - 137,933,714 (+)NCBIGRCr8
mRatBN7.23117,480,517 - 117,480,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,480,517 - 117,480,588 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map3q36NCBI
LOC119865799
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2418,392,056 - 18,392,126 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02419,020,530 - 19,020,600 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2419,020,530 - 19,020,600 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,576,765 - 18,576,835 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,687,017 - 18,687,087 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02419,016,116 - 19,016,186 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snord57
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:162
Count of miRNA genes:144
Interacting mature miRNAs:158
Transcripts:ENSMUST00000083338
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
1558989Gnf4_mgrowth and fatness 4 (mouse)Not determined2128173704132714157Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083338
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2130,119,936 - 130,120,007 (+)Ensembl
GRCm38.p6 Ensembl2130,278,016 - 130,278,087 (+)Ensembl
RefSeq Acc Id: NR_028528
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,119,946 - 130,120,008 (+)NCBI
GRCm382130,278,026 - 130,278,088 (+)ENTREZGENE
MGSCv372130,103,762 - 130,103,824 (+)RGD
Celera2131,502,433 - 131,502,495 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Promoters
RGD ID:6878738
Promoter ID:EPDNEW_M2820
Type:single initiation site
Name:Snord57_1
Description:Mus musculus small nucleolar RNA, C/D box 57 , small nucleolarRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382130,278,018 - 130,278,078EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065272 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083338 ENTREZGENE
MGD MGI:3819544 ENTREZGENE
NCBI Gene 100217428 ENTREZGENE
PhenoGen Snord57 PhenoGen
RNAcentral URS00000893B1 RNACentral