Eif1ad11 (eukaryotic translation initiation factor 1A domain containing 11) - Rat Genome Database

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Gene: Eif1ad11 (eukaryotic translation initiation factor 1A domain containing 11) Mus musculus
Analyze
No known orthologs.
Symbol: Eif1ad11
Name: eukaryotic translation initiation factor 1A domain containing 11
RGD ID: 2302473
MGI Page MGI
Description: Predicted to enable translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to be active in cytoplasm.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 100039129; Gm2056
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Eif1ad8  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,991,799 - 87,995,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,991,801 - 87,995,143 (+)EnsemblGRCm39 Ensembl
GRCm381288,025,029 - 88,028,791 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1288,027,004 - 88,027,438 (+)EnsemblGRCm38mm10GRCm38
MGSCv371289,265,448 - 89,265,882 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361289,263,475 - 89,267,473NCBIMGSCv36mm8
Cytogenetic Map12D2NCBI
cM Map1242.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
triptonide  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

Variants

.
Variants in Eif1ad11
50 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENSMUST00000178852
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000178852   ⟹   ENSMUSP00000137563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1287,991,801 - 87,995,143 (+)Ensembl
GRCm38.p6 Ensembl1288,027,004 - 88,027,438 (+)Ensembl
RefSeq Acc Id: XM_001472259   ⟹   XP_001472309
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381288,027,004 - 88,027,438 (+)ENTREZGENE
MGSCv371289,265,448 - 89,265,882 (+)RGD
cM Map12 ENTREZGENE
Protein Sequences
Ensembl Protein ENSMUSP00000137563.2
Reference Protein Sequences
RefSeq Acc Id: XP_001472309   ⟸   XM_001472259
RefSeq Acc Id: ENSMUSP00000137563   ⟸   ENSMUST00000178852
Protein Domains
S1-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-J3QQ02-F1-model_v2 AlphaFold J3QQ02 1-144 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3780224 AgrOrtholog
Ensembl Genes ENSMUSG00000095717 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000178852.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  RNA-binding_domain_S1_IF1 UniProtKB/TrEMBL
  TIF_eIF-1A UniProtKB/TrEMBL
  TIF_eIF-1A_CS UniProtKB/TrEMBL
MGD MGI:3780224 ENTREZGENE
NCBI Gene 100039129 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-RELATED UniProtKB/TrEMBL
  PTHR21668 UniProtKB/TrEMBL
Pfam eIF-1a UniProtKB/TrEMBL
PhenoGen Eif1ad11 PhenoGen
PROSITE IF1A UniProtKB/TrEMBL
  S1_IF1_TYPE UniProtKB/TrEMBL
SMART eIF1a UniProtKB/TrEMBL
Superfamily-SCOP Nucleic_acid_OB UniProtKB/TrEMBL
UniProt J3QQ02_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-10-26 Eif1ad11  eukaryotic translation initiation factor 1A domain containing 11  Gm2056  predicted gene 2056  Symbol and/or name updated 27372883 PROVISIONAL