Gm3852 (predicted gene 3852) - Rat Genome Database

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Gene: Gm3852 (predicted gene 3852) Mus musculus
Analyze
Symbol: Gm3852
Name: predicted gene 3852
RGD ID: 2299650
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 100042453; bladder cancer associated protein
Related Functional Gene: Blcap  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39146,049,395 - 46,051,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl146,050,917 - 46,051,180 (-)EnsemblGRCm39 Ensembl
GRCm38146,010,235 - 46,012,263 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl146,011,757 - 46,012,020 (-)EnsemblGRCm38mm10GRCm38
MGSCv37146,068,392 - 46,069,108 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36146,068,392 - 46,069,062 (-)NCBIMGSCv36mm8
Celera146,355,394 - 46,356,110 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm3852
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:254
Count of miRNA genes:227
Interacting mature miRNAs:239
Transcripts:ENSMUST00000169792, ENSMUST00000182781
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
12050090Shm1_msperm head morphology 1 (mouse)14418690450816935Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
10412179Habiir1_mhyperoxic acute lung injury imprinted region 1 (mouse)Not determined14541777351964119Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000182781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl146,050,917 - 46,051,180 (-)Ensembl
GRCm38.p6 Ensembl146,011,757 - 46,012,020 (-)Ensembl
RefSeq Acc Id: NM_001177356   ⟹   NP_001170827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38146,011,547 - 46,012,263 (-)ENTREZGENE
MGSCv37146,068,392 - 46,069,108 (-)RGD
Celera146,355,394 - 46,356,110 (-)RGD
cM Map1 ENTREZGENE
Protein Sequences
GenBank Protein EDK96873 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001170827   ⟸   NM_001177356


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3782024 AgrOrtholog
Ensembl Genes ENSMUSG00000090682 Ensembl
MGD MGI:3782024 ENTREZGENE
NCBI Gene 100042453 ENTREZGENE
PhenoGen Gm3852 PhenoGen