Shm1_m QTL Report (Mus musculus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
QTL Registration

QTL: Shm1_m (sperm head morphology 1 (mouse)) Mus musculus

Symbol: Shm1_m
Name: sperm head morphology 1 (mouse)
RGD ID: 12050090
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm39144,186,904 - 50,816,935MOUSEQTLGRCm39
GRCm38144,147,744 - 50,777,776MOUSEQTLGRCm38
cM Map1syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:22438012  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
10534Ercc5excision repair cross-complementing rodent repair deficiency, complementation group 514418408444220399Mouse
401836186LOC132407796STARR-positive B cell enhancer mm9_chr1:44204561-4420486214418687644187177Mouse
1622771Mettl21emethyltransferase like 21E14423865144258260Mouse
7178453Gm15833predicted gene 1583314425088544252789Mouse
329962017LOC131295493STARR-seq mESC enhancer starr_0079814427319644275279Mouse
329966791LOC131295494STARR-seq mESC enhancer starr_0079914430517644306529Mouse
329965301LOC131295495STARR-seq mESC enhancer starr_0080014436881244371990Mouse
2309999Gm5700predicted gene 570014436921144370198Mouse
329967724LOC131295496STARR-seq mESC enhancer starr_0080114442658744428520Mouse
10000624Gm28893predicted gene 2889314443186444433611Mouse
329965150LOC131295497STARR-seq mESC enhancer starr_0080214443227144435331Mouse
329966665LOC131295498STARR-seq mESC enhancer starr_0080314443662744438301Mouse
329963054LOC131295499STARR-seq mESC enhancer starr_0080414445766444458905Mouse
1624062Txn-ps1thioredoxin, pseudogene 114450302844503453Mouse
10012316Gm39635predicted gene, 3963514456172444590619Mouse
1314964Gulp1GULP, engulfment adaptor PTB domain containing 114459054044835998Mouse
329963226LOC131295500STARR-seq mESC enhancer starr_0080614460304344604234Mouse
329967866LOC131295501STARR-seq mESC enhancer starr_0080714460726844608173Mouse
329964439LOC131295502STARR-seq mESC enhancer starr_0080814465173044653355Mouse
5147007Gm16102predicted gene 1610214468295244684058Mouse
16091814930521E06RikRIKEN cDNA 4930521E06 gene14477883544784109Mouse
329963454LOC131295503STARR-seq mESC enhancer starr_0080914482092844821899Mouse
2310889Gm3489predicted gene 348914484957344878858Mouse
5141402Gm19480predicted gene, 1948014491264644916560Mouse
2310888Gm3496predicted gene 349614496332344977767Mouse
329962350LOC131295504STARR-seq mESC enhancer starr_0081014502952545030597Mouse
329965425LOC131295505STARR-seq mESC enhancer starr_0081114509586945097097Mouse
2309278Gm5268predicted gene 526814521722745218166Mouse
329967896LOC131295506STARR-seq mESC enhancer starr_0081214530724545308707Mouse
732584Col3a1collagen, type III, alpha 114535069845388866Mouse
329965266LOC131295507STARR-seq mESC enhancer starr_0081314539652245398505Mouse
736789Col5a2collagen, type V, alpha 214541349145542442Mouse
1614517Gm8296predicted gene 829614555249345553274Mouse
2310872Gm7063predicted gene 706314555876745559999Mouse
329963842LOC131295508STARR-seq mESC enhancer starr_0081514561375145615820Mouse
329962103LOC131295509STARR-seq mESC enhancer starr_0081614562570945627665Mouse
329966773LOC131295510STARR-seq mESC enhancer starr_0081714562901345630411Mouse
329965339LOC131295511STARR-seq mESC enhancer starr_0081814563305745634593Mouse
2294180Gm8304predicted gene 830414564118745641949Mouse
10034673Gm39637predicted gene, 3963714572395345773289Mouse
14996676Gm23216predicted gene, 2321614572461645724722Mouse
329962216LOC131295512STARR-seq mESC enhancer starr_0081914577965145781411Mouse
15019017Gm51621predicted gene, 5162114578566645804266Mouse
329964608LOC131295513STARR-seq mESC enhancer starr_0082014578580545788147Mouse
15002683Gm23974predicted gene, 2397414578605545786185Mouse
1613738Gm8307predicted gene 830714580767145808643Mouse
401835900LOC132407797STARR-positive B cell enhancer mm9_chr1:45851844-4585214514583415945834460Mouse
1557986Wdr75WD repeat domain 7514583431345862798Mouse
401841319LOC132407798STARR-positive B cell enhancer ABC_E327114585610145856402Mouse
9613598Gm30900predicted gene, 3090014586531145869057Mouse
1621156Gm5526predicted pseudogene 552614589634845896901Mouse
329964864LOC131295514STARR-seq mESC enhancer starr_0082314589906745900508Mouse
2294215Gm5269predicted gene 526914592741245929536Mouse
329962558LOC131295515STARR-seq mESC enhancer starr_0082414593537445936803Mouse
5143256Gm18303predicted gene, 1830314594478345945958Mouse
733073Slc40a1solute carrier family 40 (iron-regulated transporter), member 114594723045965690Mouse
2310115Gm9496predicted gene 949614601034246016135Mouse
1617372Rpl23a-ps1ribosomal protein 23A, pseudogene 114602069146021227Mouse
2299650Gm3852predicted gene 385214604939546051423Mouse
1621370Stk-ps2serine/threonine kinase 214605957546069597Mouse
5142703Gm18849predicted gene, 1884914609547046098146Mouse
1617371Dnah7bdynein, axonemal, heavy chain 7B14610523246412711Mouse
329969283LOC131295516STARR-seq mESC enhancer starr_0082514621003446210949Mouse
9674125Gm31046predicted gene, 3104614626114746271859Mouse
329963023LOC131295517STARR-seq mESC enhancer starr_0082614629390646296233Mouse
329963439LOC131295518STARR-seq mESC enhancer starr_0082714638135846383648Mouse
15002790n-R5s211nuclear encoded rRNA 5S 21114641335746413475Mouse
329967442LOC131295519STARR-seq mESC enhancer starr_0082814642217046422930Mouse
2294174Gm8326predicted gene 832614645357846456183Mouse
1617423Dnah7cdynein, axonemal, heavy chain 7C14646459046846637Mouse
329968805LOC131295520STARR-seq mESC enhancer starr_0082914655348546554388Mouse
329967711LOC131295521STARR-seq mESC enhancer starr_0083014668829646690503Mouse
1316446Slc39a10solute carrier family 39 (zinc transporter), member 1014684670446964952Mouse
401837398LOC132407799STARR-positive B cell enhancer mm9_chr1:46910239-4691054014689255446892855Mouse
401840913LOC132407800STARR-positive B cell enhancer mm9_chr1:46910886-4691118614689320146893501Mouse
329968000LOC131295522STARR-seq mESC enhancer starr_0083614696035146961808Mouse
329963814LOC131295523STARR-seq mESC enhancer starr_0083814704591947048306Mouse
329969132LOC131295524STARR-seq mESC enhancer starr_0083914705301947054346Mouse
329964831LOC131295525STARR-seq mESC enhancer starr_0084214713640047138062Mouse
329963221LOC131295526STARR-seq mESC enhancer starr_0084314714461447145860Mouse
329966117LOC131295527STARR-seq mESC enhancer starr_0084414718796447189495Mouse
329968493LOC131295528STARR-seq mESC enhancer starr_0084514724616847247372Mouse
10013572Gm39638predicted gene, 3963814729102247327236Mouse
329962104LOC131295529STARR-seq mESC enhancer starr_0084614735851347359697Mouse
1617370Gm4852predicted pseudogene 485214740416147405636Mouse
10015186Gm39639predicted gene, 3963914747268347500319Mouse
329964096LOC131295530STARR-seq mESC enhancer starr_0084714748502347485843Mouse
9673045Mir6350microRNA 635014750618047506284Mouse
5143442Gm18117predicted gene, 1811714751867047519357Mouse
329967333LOC131295531STARR-seq mESC enhancer starr_0084814752751347528411Mouse
2294173Gm8337predicted gene 833714769678647698870Mouse
329962709LOC131295532STARR-seq mESC enhancer starr_0084914775984047761096Mouse
329968479LOC131295533STARR-seq mESC enhancer starr_0085014786586147866965Mouse
329962658LOC131295534STARR-seq mESC enhancer starr_0085114787268447873732Mouse
329963035LOC131295535STARR-seq mESC enhancer starr_0085314795281947954859Mouse
5142341Gm19206predicted gene, 1920614795429547954996Mouse
329963379LOC131295536STARR-seq mESC enhancer starr_0085414833595448337201Mouse
2294295Gm5974predicted gene 597414835282648354028Mouse
329969311LOC131295537STARR-seq mESC enhancer starr_0085514837179248373020Mouse
14998285Gm23240predicted gene, 2324014850133248501452Mouse
329965194LOC131295538STARR-seq mESC enhancer starr_0085614858440948585656Mouse
329966541LOC131295539STARR-seq mESC enhancer starr_0085814869055148692593Mouse
329963530LOC131295540STARR-seq mESC enhancer starr_0086014873734448738883Mouse
329966150LOC131295541STARR-seq mESC enhancer starr_0086114875374948755567Mouse
2309181Gm8354predicted gene 835414876979848772256Mouse
5142427Gm19124predicted gene, 1912414882282248823752Mouse
329963187LOC131295542STARR-seq mESC enhancer starr_0086214884220048843559Mouse
2294111Gm8357predicted gene 835714892085448922084Mouse
329968330LOC131295543STARR-seq mESC enhancer starr_0086314927142349273040Mouse
2309178Gm8367predicted gene 836714927538249276167Mouse
1617140C230029F24RikRIKEN cDNA C230029F24 gene14928377549379590Mouse
329969759LOC131295544STARR-seq mESC enhancer starr_0086414930926149310217Mouse
329968722LOC131295545STARR-seq mESC enhancer starr_0086514938840549389759Mouse
329963205LOC131295546STARR-seq mESC enhancer starr_0086614939198549393503Mouse
2310147Gm6757predicted gene 675714943794349439958Mouse
2310703Gm3605predicted gene 360514953771249538142Mouse
329962730LOC131295547STARR-seq mESC enhancer starr_0086714955892049559960Mouse
329963191LOC131295548STARR-seq mESC enhancer starr_0086814957580749577045Mouse
329967696LOC131295549STARR-seq mESC enhancer starr_0086914974745149748904Mouse
329964510LOC131295550STARR-seq mESC enhancer starr_0087014992406949925781Mouse
1623375Gm8384predicted gene 838415009594150097646Mouse
1623373Gm8391predicted gene 839115021672850217450Mouse
10032264Gm39640predicted gene, 3964015033706150361207Mouse
329968647LOC131295551STARR-seq mESC enhancer starr_0087115043874250440280Mouse
5138227Gm20118predicted gene, 2011815057218950572350Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
12050090Shm1_msperm head morphology 1 (mouse)14418690450816935Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
10412179Habiir1_mhyperoxic acute lung injury imprinted region 1 (mouse)Not determined14541777351964119Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:5816274 MouseQtl