Uba52rt (ubiquitin A-52 residue ribosomal protein fusion product 1, retrotransposed) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Uba52rt (ubiquitin A-52 residue ribosomal protein fusion product 1, retrotransposed) Mus musculus
Analyze
No known orthologs.
Symbol: Uba52rt
Name: ubiquitin A-52 residue ribosomal protein fusion product 1, retrotransposed
RGD ID: 2294417
MGI Page MGI
Description: Predicted to be a structural constituent of ribosome. Predicted to be located in several cellular components, including cytosolic ribosome; endoplasmic reticulum; and nucleoplasm. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human UBA52 (ubiquitin A-52 residue ribosomal protein fusion product 1).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: Gm11808; Uba52
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Uba52  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3943,973,117 - 3,973,595 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl43,973,092 - 3,973,595 (-)EnsemblGRCm39 Ensembl
GRCm3843,973,117 - 3,973,595 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl43,973,092 - 3,973,595 (-)EnsemblGRCm38mm10GRCm38
MGSCv3743,900,264 - 3,900,741 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3643,900,231 - 3,905,419 (-)NCBIMGSCv36mm8
Celera43,929,684 - 3,930,161 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12040188   PMID:14610273  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:185
Count of miRNA genes:182
Interacting mature miRNAs:185
Transcripts:ENSMUST00000089430
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11049579Lmr9b_mleishmaniasis resistance 9b (mouse)4120657234Mouse
11049580Lmr9a_mleishmaniasis resistance 9 (mouse)4120657234Mouse
1301274Lmr9_mleishmaniasis resistance 9 (mouse)Not determined4120657234Mouse
10412079Sm1_msusceptibility to Schistosoma mansoni infection 1 (mouse)Not determined4122955614Mouse
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000089430   ⟹   ENSMUSP00000086852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl43,973,092 - 3,973,595 (-)Ensembl
GRCm38.p6 Ensembl43,973,092 - 3,973,595 (-)Ensembl
Protein Sequences
GenBank Protein EDL05703 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000086852   ⟸   ENSMUST00000089430


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3649356 AgrOrtholog
Ensembl Genes ENSMUSG00000068240 Ensembl, ENTREZGENE
MGD MGI:3649356 ENTREZGENE
NCBI Gene 666586 ENTREZGENE
PhenoGen Uba52rt PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-01 Uba52rt  ubiquitin A-52 residue ribosomal protein fusion product 1, retrotransposed  Gm11808  predicted gene 11808  Symbol and/or name updated 27372883 PROVISIONAL