Rpl36a-ps1 (ribosomal protein L36A, pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rpl36a-ps1 (ribosomal protein L36A, pseudogene 1) Mus musculus
Analyze
No known orthologs.
Symbol: Rpl36a-ps1
Name: ribosomal protein L36A, pseudogene 1
RGD ID: 2294067
MGI Page MGI
Description: Predicted to be part of cytosolic large ribosomal subunit.
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000060377; Gm10077
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rpl36a  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391499,231,306 - 99,231,785 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1499,231,306 - 99,231,754 (-)EnsemblGRCm39 Ensembl
GRCm381498,993,870 - 98,994,349 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1498,993,870 - 98,994,318 (-)EnsemblGRCm38mm10GRCm38
MGSCv371499,393,089 - 99,393,568 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361499,393,089 - 99,393,573 (-)NCBIMGSCv36mm8
Celera1497,666,368 - 97,666,847 (-)NCBICelera
Cytogenetic Map14E2.2NCBI
cM Map1449.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

Variants

.
Variants in Rpl36a-ps1
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:45
Interacting mature miRNAs:45
Transcripts:ENSMUST00000081987
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
13524530Bodwtq11_mbody wweight QTL 11 (mouse)1487767629102538219Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000081987   ⟹   ENSMUSP00000153782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1499,231,306 - 99,231,754 (-)Ensembl
GRCm38.p6 Ensembl1498,993,870 - 98,994,318 (-)Ensembl
Protein Sequences
GenBank Protein EDL00453 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000153782   ⟸   ENSMUST00000081987

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A2I3BPG9-F1-model_v2 AlphaFold A0A2I3BPG9 1-106 view protein structure

Promoters
RGD ID:6824964
Promoter ID:MM_KWN:17618
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:XM_001472147_GM10077
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361499,393,411 - 99,393,911 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3642585 AgrOrtholog
Ensembl Genes ENSMUSG00000060377 Ensembl, ENTREZGENE
MGD MGI:3642585 ENTREZGENE
NCBI Gene 100043787 ENTREZGENE
PhenoGen Rpl36a-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rpl36a-ps1  ribosomal protein L36A, pseudogene 1  Gm10077  predicted gene 10077  Symbol and/or name change 5135510 APPROVED