A530040E14Rik (RIKEN cDNA A530040E14 gene) - Rat Genome Database

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Gene: A530040E14Rik (RIKEN cDNA A530040E14 gene) Mus musculus
Analyze
Symbol: A530040E14Rik
Name: RIKEN cDNA A530040E14 gene
RGD ID: 2293057
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39185,083,814 - 85,091,759 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl185,083,667 - 85,091,756 (+)EnsemblGRCm39 Ensembl
GRCm38185,106,093 - 85,114,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl185,105,946 - 85,114,035 (+)EnsemblGRCm38mm10GRCm38
MGSCv37185,103,200 - 85,110,610 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36184,990,837 - 84,993,050 (+)NCBIMGSCv36mm8
Celera187,465,427 - 87,467,769 (-)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in A530040E14Rik
185 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:499
Count of miRNA genes:279
Interacting mature miRNAs:298
Transcripts:ENSMUST00000093501, ENSMUST00000159087, ENSMUST00000161150, ENSMUST00000161666, ENSMUST00000162353, ENSMUST00000162453
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1302029Sst1_msusceptibility to tuberculosis 1 (mouse)Not determined18165211487130822Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18197771588427722Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18342011988552630Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000093501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,084,355 - 85,091,756 (+)Ensembl
GRCm38.p6 Ensembl185,106,634 - 85,114,035 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,084,375 - 85,091,495 (+)Ensembl
GRCm38.p6 Ensembl185,106,654 - 85,113,774 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,089,533 - 85,091,746 (+)Ensembl
GRCm38.p6 Ensembl185,111,812 - 85,114,025 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,084,373 - 85,091,304 (+)Ensembl
GRCm38.p6 Ensembl185,106,652 - 85,113,583 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162353
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,083,667 - 85,091,753 (+)Ensembl
GRCm38.p6 Ensembl185,105,946 - 85,114,032 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,084,365 - 85,091,184 (+)Ensembl
GRCm38.p6 Ensembl185,106,644 - 85,113,463 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,083,862 - 85,091,753 (+)Ensembl
RefSeq Acc Id: NR_163968
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,083,814 - 85,091,759 (+)NCBI
GRCm38185,106,093 - 85,114,038 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAE37186 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6874276
Promoter ID:EPDNEW_M589
Type:single initiation site
Name:AK087744_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38185,105,873 - 85,105,933EPDNEW
RGD ID:15092154
Promoter ID:EPDNEWNC_M59
Type:initiation region
Name:A530040E14Rik_1
Description:RIKEN cDNA A530040E14 gene [Source:MGISymbol;Acc:MGI:3612703]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38185,111,785 - 85,111,845EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000072109 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000162353 ENTREZGENE
MGD MGI:3612703 ENTREZGENE
NCBI Gene 621875 ENTREZGENE
PhenoGen A530040E14Rik PhenoGen
RNAcentral URS0000EEAC8D RNACentral
UniProt Q3TR44_MOUSE UniProtKB/TrEMBL