Trmt61b (tRNA methyltransferase 61B)

Gene: Trmt61b (tRNA methyltransferase 61B) Mus musculus

Analyze

Symbol:

Trmt61b

Name:

tRNA methyltransferase 61B

RGD ID:

2290336

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

1110039F03Rik; 623451; Gm6431; predicted gene 6431

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	71,864,022 - 71,905,756 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	71,864,022 - 71,905,793 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	71,557,027 - 71,598,761 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	71,557,027 - 71,598,755 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	71,906,367 - 71,948,101 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	71,937,855 - 71,947,643 (-)	NCBI		MGSCv36	mm8
Celera	17	75,832,787 - 75,874,806 (-)	NCBI		Celera
Cytogenetic Map	17	E1.3	NCBI
cM Map	17	41.87	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in Trmt61b
1730 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	113
Count of miRNA genes:	95
Interacting mature miRNAs:	95
Transcripts:	ENSMUST00000130952, ENSMUST00000137830, ENSMUST00000143828
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301338	Lmr1_m	leishmaniasis resistance 1 (mouse)			Not determined		17	10081340	86996400	Mouse
4142150	Stheal11_m	soft tissue heal 11 (mouse)			Not determined		17	12286211	83361768	Mouse
1300592	Pcyts5_m	plasmacytoma susceptibility 5 (mouse)			Not determined		17	38712887	72712970	Mouse
10755525	Lymph2_m	lymphocyte differential 2 (mouse)					17	38805626	72805626	Mouse
10755534	Lymph4_m	lymphocyte differential 4 (mouse)					17	38805626	72805626	Mouse
4141319	Hmtb8_m	hemostasis and thrombosis rebleeding time 8 (mouse)			Not determined			40534447	74534623	Mouse
15039324	Nmrs48_m	NAFLD-associated magnetic resonance shift 48 (mouse)					17	40939187	74939187	Mouse
26884428	Cvht3_m	cranial vault height 3, 5 week (mouse)					17	46510926	82407429	Mouse
1357754	Ahl3_m	age related hearing loss 3 (mouse)			Not determined		17	50203957	84204103	Mouse
4141879	Chlq9_m	circulating hormone level QTL 9 (mouse)			Not determined		17	51758425	85758612	Mouse
1357532	Bmch7_m	bone mechanical trait 7 (mouse)			Not determined		17	51758425	85758612	Mouse
1357447	Heal13_m	wound healing/regeneration 13 (mouse)			Not determined		17	57107651	91107803	Mouse
4141758	Pstc5_m	periosteal circumference 5 (mouse)			Not determined		17	57107651	91107803	Mouse
4141011	Bmd26_m	bone mineral density 26 (mouse)			Not determined		17	57107651	91107803	Mouse
1300735	Pgia20_m	proteoglycan induced arthritis 20 (mouse)			Not determined		17	57107651	91107803	Mouse
12910536	Nrq8a_m	noise-induced hearing loss resistant QTL 8a (mouse)					17	57107651	91107803	Mouse
12910537	Nrq8_m	noise-induced hearing loss resistant QTL 8 (mouse)					17	57107651	91107803	Mouse
4142201	Obrq15_m	obesity resistance QTL 15 (mouse)			Not determined			57534447	80885776	Mouse
4142414	Pregq4_m	pregnancy QTL 4 (mouse)			Not determined		17	57534447	93507179	Mouse
4141040	Hmtb9_m	hemostasis and thrombosis rebleeding time 9 (mouse)			Not determined			57589089	91589197	Mouse
1301107	Scc4_m	colon tumor susceptibility 4 (mouse)			Not determined		17	62301010	95294699	Mouse
11528551	Sluc32_m	susceptibility to lung cancer 32 (mouse)					17	62301010	95294699	Mouse
1302017	Aliq3_m	acute lung injury QTL 3 (mouse)			Not determined		17	63885548	95294699	Mouse
1301728	Ffal1_m	free fatty acid level 1 (mouse)			Not determined		17	65214938	95294699	Mouse
14928308	Manh82_m	mandible shape 82 (mouse)					17	66315243	95294699	Mouse
13464254	Ifvrq3_m	influenza virus resistance QTL 3 (mouse)					17	67957655	83908089	Mouse
4142256	Nilac12_m	nicotine induced locomotor activity 12 (mouse)			Not determined		17	68941319	95294699	Mouse
11039500	Ltpr7c_m	Leishmania tropica response 7c (mouse)					17	70701198	95294699	Mouse
11039498	Ltpr7b_m	Leishmania tropica response 7b (mouse)					17	70701198	95294699	Mouse
11039499	Ltpr7a_m	Leishmania tropica response 7a (mouse)					17	70701198	95294699	Mouse
11039514	Ltpr7_m	Leishmania tropica response 7 (mouse)					17	70701198	95294699	Mouse
11565819	Ppipq1_m	prepulse inhibition percentage QTL 1 (mouse)					17	71057655	75377655	Mouse

Markers in Region

D10Mit52.1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	17	71,575,382 - 71,575,515	UniSTS	GRCm38
GRCm38	10	33,707,123 - 33,707,257	UniSTS	GRCm38
MGSCv37	10	33,426,929 - 33,427,063	UniSTS	GRCm37
MGSCv37	17	71,924,722 - 71,924,855	UniSTS	GRCm37
Celera	17	75,850,959 - 75,851,092	UniSTS
Celera	10	34,617,202 - 34,617,336	UniSTS
Cytogenetic Map	17	E1.3	UniSTS
cM Map	10	23.0	UniSTS
cM Map	10		UniSTS
Whitehead Genetic	10	17.5	UniSTS

UniSTS:237689

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	17	71,594,419 - 71,594,670	UniSTS	GRCm38
MGSCv37	17	71,943,759 - 71,944,010	UniSTS	GRCm37
Celera	17	75,870,551 - 75,870,802	UniSTS
Cytogenetic Map	17	E1.3	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_015549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_027952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_027953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA268702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI265689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK004173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK032413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK036113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AV281826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY267261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ209011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT010429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000130952

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,864,022 - 71,905,750 (-)	Ensembl
GRCm38.p6 Ensembl	17	71,557,027 - 71,598,755 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000137830

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,864,057 - 71,905,741 (-)	Ensembl
GRCm38.p6 Ensembl	17	71,557,062 - 71,598,746 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000143828

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,895,504 - 71,905,793 (-)	Ensembl
GRCm38.p6 Ensembl	17	71,588,557 - 71,598,253 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242121

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,895,506 - 71,905,762 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242169

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,901,174 - 71,905,790 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242580

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,895,505 - 71,905,766 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243283

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,895,549 - 71,905,722 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243300

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,895,555 - 71,905,764 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243687

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,895,491 - 71,905,783 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243769

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,895,506 - 71,905,764 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000244353

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	71,895,508 - 71,905,741 (-)	Ensembl

RefSeq Acc Id:

NR_015549

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	71,864,022 - 71,905,756 (-)	NCBI
GRCm38	17	71,557,027 - 71,598,761 (-)	ENTREZGENE
MGSCv37	17	71,906,367 - 71,948,101 (-)	RGD
Celera	17	75,832,787 - 75,874,806 (-)	RGD
cM Map	17		ENTREZGENE

Sequence:

show sequence

GACAGCACCTGCTCCGGACGTCAGGCTCTCTAAGGACGACGTGGTTCTTCCTTGTGAGGTTGAG
GCGCCCGAGAGGCGATCAGAGCTCAGAGCCGATTCATTCCTGCTTGACTTTGGGTCGGTGCCTC
GTGAGCGAGCTCATTTCCCGGGGTTGCGGGTCCTTGCCTGGGGACACGCGAGTTGGAGAGCGCG
TGCACCGGTCGTTCCCTTCCCGTGCTGCCCGCGTCCGGATCGTCGGGACCCGGTTGTCTCTAGT
ATGTGGAAAGGCTCGGGCTGGGAACTTCGAGGGAGGAGTTACCCCCTCGAGATCCGGAGGACCA
GAGCGGAGAGCAGGGCCACTGAGACCCTACAGGATATGACTCCGAGGATCGCGTGCTGGACACG
AGTGGCTACCGAGCCCGGAGAGCTTCGCGCTGCCTCCTCCTGGTCCCTTTCCAGAGGACTCTTT
TCAGTCGGGGATGCTTATTAAAGCTCTGGCGGGAAAGAGAGAATCACAATTAAAGAAATTAGTC
CTACTCTGCAACGTCGGACACTTTAATAGTAACTGGGGAGCGATTGCGTTCAGGGAGATCGAGG
ACAAGTATCCTGGCCAGATCCTGACATGTTTTCCCGGTAAGAGTTCTCTGCGGAGGCCACCTTT
GGAGGACTCTGTATATTGATGGAAGAGGGAACGCCGGAACCTATCCCAAAAGTATTGTCATGGG
AATTAGGTGTGTGTGGGTTCCAGGAAGGGCGAGGACGGACGGCGCACTACCACAGTCCGATGAA
TGTTCTCATCACCGACCTTTGGAGTTTTTCAGCATGTTGGATTTTTAAACATGTTCAGGTTGGA
AAATTGAGAGTGTAATGTTAACAGTAAAGTTTAACCTTTTAAGCTGGTGGAGGAAGTTCAGACC
ACACCTGAACTGGTACCTGAGATGACAGCACTGAATCTGAAGACAAAGAAGGATCAAATTAGAA
CTGACTATTATTAGTCACTACTTCAGAAAGTCTTTTTACCTTATTTTGGGTTTCTGGATTAAGA
GAGTAGCAGACCATCCTCAGAAGTCTCTGGCCGCTTACAGGAAGAGGAAGTGGGAGGATTACTG
GGAGAATTCATGAGACCTCAACTTCTCGCAAAAGAATATATTCTTTGAGAAAAGAGGAACTGTG
GCTTTTTTACCCTGGCTGAGAACCGTTTATAATTATAGATGAATGACTGTAAGGTGTGGAGATC
AGAGAACAATGGAAGCCTGTTCCCTTCTTCCCTTCCACATGTGAAACCTGGGATCATCTTATTC
ATCGGCTTTACCAGCCAATGCAGTTTGTCAATTTTAAGAGGCAGAAATGGAATCTGGTGCAAGA
TAATTCATCTTTGAAGAAATGCTGTTCTAAGGGTATTATTTTTCTATTACTTTCTCCTCTCAAG
GAACAGGATTTGTGGGGGAGGGGTGGAGTGGACCTTTCCTCCTAATTCCTCTCTAGTCTACTTA
TTATTCAAACAAAAATATAACCATGTATATATAAATAACTTCAAATTTTACTTAGATTTATAAT
TAGCATTTAATTTTGGGAAAATTGATTAGGATTGCAAGATCAACAAAATCAAGAATAATATCTA
TCCCAGAGTGGTGGTGCAAACCTTTAATCTGCACTTGGGAAGCAGAGGCAGGAAGATCTCTGTG
AGTTCAAGGCTGGTCTGGTCTACTCCAGGCTAGCCAGTGCTATATGGTGAGACCTGTCTCAAAA
CAAAAACAAAAAGAAAATACAACAAAGACCAACAAAAAACAAAAACAACTCTGGTTTTGATTCG
AAAGCATTAAATAGATAATCTCAAAATTGTTGAAAACTATCAGAATATAAGTAAATCCCCTTCA
TTTTATTAACAAGGCAAAAGTTCTTTATGTTCATTTTGCATGTTATAAATTATAAAATTGTAAT
TAATATTTGGAAAATTGTAGGGATAACTATTGATTTTTCTGAGAATTCGTTTTGTTAATTCTGT
TTCTATTTCACAAGGTAGCTAAAATAGTAGAATCAGGTGTTTTCTTAGGACAGTGAAAAATATT
CAAAAAGTTTGTGGTTAAGGGCTGGAGATGACTAACAAAATAGGAATTTGGCTTGTTGATCCCA
GTATTGGTAGGTCAAGGTGGAAGGATAGAAACTCAAGGTCATCCGTGGCTACATAAAGAGTTGA
AGGCTAGCCTGGCCTAGGTGAGACCCTTTCTAAAACAAAGTCAGGGGAGTAAAGAAAAGTTTGT
GGGTAATAATTTTATTTTTAATTAGGAGAAATGGAAACATGTTAACATTCTCTATTCTGATGGG
GAAATCTTTATAACTTATTTATATTCCTTACATATTTTATGTCATGTTTTAATTTTGATATTCT
TTATATCTTACCAAGTTTGTTTGAATGCACATAGCCTTCTTCTATAAACAAGGAGGACTGTGGG
TTGTGTGGTATTATTTGATTTCTTATCAGGAAACATCAACACTATCCCTTATTCTAATGTCTAC
CTTGCTGCCATGCATGCAAAACAGGCTCCTTTGTCTGGTATAAATACTACAAAGAAGTCTCTAT
TTGTCTGTTAATAAATGTATAAACAAAAGAGTCCTATATAATAAAAATTCAATTTAAACCTC

hide sequence

RefSeq Acc Id:

NR_027952

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	71,864,022 - 71,905,756 (-)	NCBI
GRCm38	17	71,557,027 - 71,598,761 (-)	ENTREZGENE
MGSCv37	17	71,906,367 - 71,948,101 (-)	RGD
Celera	17	75,832,787 - 75,874,806 (-)	RGD
cM Map	17		ENTREZGENE

Sequence:

show sequence

GACAGCACCTGCTCCGGACGTCAGGCTCTCTAAGGACGACGTGGTTCTTCCTTGTGAGGTTGAG
GCGCCCGAGAGGCGATCAGAGCTCAGAGCCGATTCATTCCTGCTTGACTTTGGGTCGGTGCCTC
GTGAGCGAGCTCATTTCCCGGGGTTGCGGGTCCTTGCCTGGGGACACGCGAGTTGGAGAGCGCG
TGCACCGGTCGTTCCCTTCCCGTGCTGCCCGCGTCCGGATCGTCGGGACCCGGTTGTCTCTAGT
ATGTGGAAAGGCTCGGGCTGGGAACTTCGAGGGAGGAGTTACCCCCTCGAGATCCGGAGGACCA
GAGCGGAGAGCAGGGCCACTGAGACCCTACAGGATATGACTCCGAGGATCGCGTGCTGGACACG
AGTGGCTACCGAGCCCGGAGAGCTTCGCGCTGCCTCCTCCTGGTCCCTTTCCAGAGGACTCTTT
TCAGTCGGGGATGCTTATTAAAGCTCTGGCGGGAAAGAGAGAATCACAATTAAAGAAATTAGTC
CTACTCTGCAACGTCGGACACTTTAATAGTAACTGGGGAGCGATTGCGTTCAGGGAGATCGAGG
ACAAGTATCCTGGCCAGATCCTGACATGTTTTCCCGGTAAGAGTTCTCTGCGGAGGCCACCTTT
GGAGGACTCTGTATATTGATGGAAGAGGGAACGCCGGAACCTATCCCAAAAGTATTGTCATGGG
AATTAGGTGTGTGTGGGTTCCAGGAAGGGCGAGGACGGACGGCGCACTACCACAGTCCGATGAA
TGTTCTCATCACCGACCTTTGGAGTTTTTCAGCATGTTGGATTTTTAAACATGTTCAGGTTGGA
AAATTGAGAGTGTAATGTTAACAGTAAAGTTTAACCTTTTAAGCTGGTGGAGGAAGTTCAGACC
ACACCTGAACTGGTACCTGAGATGACAGCACTGAATCTGAAGACAAAGAAGGATCAAATTAGAA
CTGACTATTATTAGTCACTACTTCAGAAAGTCTTTTTACCTTATTTTGGGTTTCTGGATTAAGA
GAGTAGCAGACCATCCTCAGAAGTCTCTGGCCGCTTACAGGAAGAGGAAGTGGGAGGATTACTG
GGAGAATTCATGAGACCTCAACTTCTCGCAAAAGAATATATTCTTTGAGAAAAGAGGAACTGTG
GCTTTTTTACCCTGGCTGAGAACCGTTTATAATTATAGATGAATGACTGTAAGTGTCAATTTTA
AGAGGCAGAAATGGAATCTGGTGCAAGATAATTCATCTTTGAAGAAATGCTGTTCTAAGGGTAT
TATTTTTCTATTACTTTCTCCTCTCAAGGAACAGGATTTGTGGGGGAGGGGTGGAGTGGACCTT
TCCTCCTAATTCCTCTCTAGTCTACTTATTATTCAAACAAAAATATAACCATGTATATATAAAT
AACTTCAAATTTTACTTAGATTTATAATTAGCATTTAATTTTGGGAAAATTGATTAGGATTGCA
AGATCAACAAAATCAAGAATAATATCTATCCCAGAGTGGTGGTGCAAACCTTTAATCTGCACTT
GGGAAGCAGAGGCAGGAAGATCTCTGTGAGTTCAAGGCTGGTCTGGTCTACTCCAGGCTAGCCA
GTGCTATATGGTGAGACCTGTCTCAAAACAAAAACAAAAAGAAAATACAACAAAGACCAACAAA
AAACAAAAACAACTCTGGTTTTGATTCGAAAGCATTAAATAGATAATCTCAAAATTGTTGAAAA
CTATCAGAATATAAGTAAATCCCCTTCATTTTATTAACAAGGCAAAAGTTCTTTATGTTCATTT
TGCATGTTATAAATTATAAAATTGTAATTAATATTTGGAAAATTGTAGGGATAACTATTGATTT
TTCTGAGAATTCGTTTTGTTAATTCTGTTTCTATTTCACAAGGTAGCTAAAATAGTAGAATCAG
GTGTTTTCTTAGGACAGTGAAAAATATTCAAAAAGTTTGTGGTTAAGGGCTGGAGATGACTAAC
AAAATAGGAATTTGGCTTGTTGATCCCAGTATTGGTAGGTCAAGGTGGAAGGATAGAAACTCAA
GGTCATCCGTGGCTACATAAAGAGTTGAAGGCTAGCCTGGCCTAGGTGAGACCCTTTCTAAAAC
AAAGTCAGGGGAGTAAAGAAAAGTTTGTGGGTAATAATTTTATTTTTAATTAGGAGAAATGGAA
ACATGTTAACATTCTCTATTCTGATGGGGAAATCTTTATAACTTATTTATATTCCTTACATATT
TTATGTCATGTTTTAATTTTGATATTCTTTATATCTTACCAAGTTTGTTTGAATGCACATAGCC
TTCTTCTATAAACAAGGAGGACTGTGGGTTGTGTGGTATTATTTGATTTCTTATCAGGAAACAT
CAACACTATCCCTTATTCTAATGTCTACCTTGCTGCCATGCATGCAAAACAGGCTCCTTTGTCT
GGTATAAATACTACAAAGAAGTCTCTATTTGTCTGTTAATAAATGTATAAACAAAAGAGTCCTA
TATAATAAAAATTCAATTTAAACCTC

hide sequence

RefSeq Acc Id:

NR_027953

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	71,895,510 - 71,905,276 (-)	NCBI
GRCm38	17	71,588,515 - 71,598,281 (-)	NCBI
MGSCv37	17	71,906,367 - 71,948,101 (-)	RGD
Celera	17	75,832,787 - 75,874,806 (-)	RGD
cM Map	17		ENTREZGENE

Sequence:

show sequence

GAAAGAGAGAATCACAATTAAAGAAATTAGTCCTACTCTGCAACGTCGGACACTTTAATAGTAA
CTGGGGAGCGATTGCGTTCAGGGAGATCGAGGACAAGTATCCTGGCCAGATCCTGACATGTTTT
CCCGGTTGGAAAATTGAGAGTGTAATGTTAACAGTAAAGTTTAACCTTTTAAGCTGGTGGAGGA
AGTTCAGACCACACCTGAACTGGTACCTGAGATGACAGCACTGAATCTGAAGACAAAGAAGGAT
CAAATTAGAACTGACTATTATTAGTCACTACTTCAGAAAGTCTTTTTACCTTATTTTGGTATGT
TTAGTTATTACTATGATTTGTATGACTTTTACATGTGTTTGAAAAGTAACAGAAGCTAAAGGCC
ATTGTACAACTGGGTAACAGTCCCGTTTTCGTTCTCTTGCATTTGGTTTGCCATTCTGTAGCTG
TGACTCCAGCTTGCTTTAGTTGAGCCTTGTCATTCTTCACTCTCTGCAAACCATTCCACGGATT
TGTTTTTCTTCACAAAATTAGTTTCATTTTCTTTGTTTGATTGATGGTCATTGGCTACTGAAAT
AAAATATGCATTTTAAGGTAAATTGTATGTATTTTTTAAGATAAAACTTTGTGTATTTTAA

hide sequence

Promoters

RGD ID:

15094890

Promoter ID:

EPDNEWNC_M2796

Type:

multiple initiation site

Name:

Trmt61b_1

Description:

tRNA methyltransferase 61B [Source:MGISymbol;Acc:MGI:1916039]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	17	71,598,755 - 71,598,815	EPDNEWNC

RGD ID:

13676730

Promoter ID:

EPDNEW_M22514

Type:

initiation region

Name:

Trmt61b_1

Description:

Mus musculus tRNA methyltransferase 61B , transcript variant2, long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	17	71,598,767 - 71,598,827	EPDNEW

RGD ID:

6827771

Promoter ID:

MM_KWN:24147

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, MEF_B4, MEF_B6, Spleen

Transcripts:

UC008DMQ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	71,947,829 - 71,948,329 (-)	MPROMDB

RGD ID:

6828295

Promoter ID:

MM_KWN:24148

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lung

Transcripts:

LINCRNA_484, NR_015549, NR_027952, NR_027953

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	71,947,846 - 71,948,346 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000085492	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000130952	ENTREZGENE
	ENSMUST00000137830	ENTREZGENE
MGD	MGI:1916039	ENTREZGENE
NCBI Gene	68789	ENTREZGENE
PhenoGen	Trmt61b	PhenoGen
RNAcentral	URS000075ABFA	RNACentral
	URS000075F0C8	RNACentral
	URS000075F12D	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-05	Trmt61b	tRNA methyltransferase 61B	Gm6431	predicted gene 6431	Data merged from RGD:2303489	737654	PROVISIONAL
2012-11-27	Trmt61b	tRNA methyltransferase 61B		tRNA methyltransferase 61 homolog B (S. cerevisiae)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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