2010016I18Rik (RIKEN cDNA 2010016I18 gene) - Rat Genome Database

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Gene: 2010016I18Rik (RIKEN cDNA 2010016I18 gene) Mus musculus
Analyze
Symbol: 2010016I18Rik
Name: RIKEN cDNA 2010016I18 gene
RGD ID: 2290319
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393106,389,302 - 106,393,229 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3106,389,298 - 106,393,229 (-)EnsemblGRCm39 Ensembl
GRCm383106,481,986 - 106,485,913 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3106,481,982 - 106,485,913 (-)EnsemblGRCm38mm10GRCm38
MGSCv373106,284,904 - 106,288,831 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363106,610,042 - 106,613,969 (-)NCBIMGSCv36mm8
Celera3108,813,933 - 108,817,868 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 2010016I18Rik
139 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:143
Interacting mature miRNAs:147
Transcripts:ENSMUST00000164330
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse

Markers in Region
UniSTS:225112  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383106,482,248 - 106,482,400UniSTSGRCm38
MGSCv373106,285,166 - 106,285,318UniSTSGRCm37
Celera3108,814,195 - 108,814,347UniSTS
Cytogenetic Map3F2.3UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000164330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,389,329 - 106,390,753 (-)Ensembl
GRCm38.p6 Ensembl3106,482,013 - 106,483,437 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,391,386 - 106,393,164 (-)Ensembl
GRCm38.p6 Ensembl3106,484,070 - 106,485,848 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,389,316 - 106,391,150 (-)Ensembl
GRCm38.p6 Ensembl3106,482,000 - 106,483,834 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,389,298 - 106,393,229 (-)Ensembl
GRCm38.p6 Ensembl3106,481,982 - 106,485,913 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,389,329 - 106,390,777 (-)Ensembl
GRCm38.p6 Ensembl3106,482,013 - 106,483,461 (-)Ensembl
RefSeq Acc Id: NR_033207
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,389,302 - 106,393,229 (-)NCBI
GRCm383106,481,986 - 106,485,913 (-)ENTREZGENE
MGSCv373106,284,904 - 106,288,831 (-)RGD
Celera3108,813,933 - 108,817,868 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAE20566 (Get FASTA)   NCBI Sequence Viewer  
  BAE24354 (Get FASTA)   NCBI Sequence Viewer  
  BAE43373 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6833645
Promoter ID:MM_KWN:35686
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   Spleen
Transcripts:ENSMUST00000061206,   NR_033207
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363106,288,141 - 106,289,182 (+)MPROMDB
RGD ID:6881970
Promoter ID:EPDNEW_M4436
Type:single initiation site
Name:2010016I18Rik_2
Description:Mus musculus RIKEN cDNA 2010016I18 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4437  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383106,483,436 - 106,483,496EPDNEW
RGD ID:15092614
Promoter ID:EPDNEWNC_M517
Type:single initiation site
Name:2010016I18Rik_1
Description:RIKEN cDNA 2010016I18 gene [Source:MGISymbol;Acc:MGI:1916456]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383106,483,436 - 106,483,496EPDNEWNC
RGD ID:6881972
Promoter ID:EPDNEW_M4437
Type:initiation region
Name:2010016I18Rik_1
Description:Mus musculus RIKEN cDNA 2010016I18 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4436  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383106,485,940 - 106,486,000EPDNEW
RGD ID:15092616
Promoter ID:EPDNEWNC_M518
Type:multiple initiation site
Name:2010016I18Rik_2
Description:RIKEN cDNA 2010016I18 gene [Source:MGISymbol;Acc:MGI:1916456]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383106,485,940 - 106,486,000EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091575 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000190356 ENTREZGENE
MGD MGI:1916456 ENTREZGENE
NCBI Gene 69206 ENTREZGENE
PhenoGen 2010016I18Rik PhenoGen
RNAcentral URS000075A183 RNACentral
UniProt Q3V2Y2_MOUSE UniProtKB/TrEMBL