Strn (striatin) - Rat Genome Database

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Gene: Strn (striatin) Heterocephalus glaber
Analyze
Symbol: Strn
Name: striatin
RGD ID: 18935935
Description: ENCODES a protein that exhibits armadillo repeat domain binding (ortholog); calmodulin binding (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN dendrite development (ortholog); locomotory behavior (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); FOUND IN bicellular tight junction (ortholog); dendritic spine (ortholog); FAR/SIN/STRIPAK complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473818,476,522 - 18,585,160 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473818,474,603 - 18,585,109 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Strn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473818,476,522 - 18,585,160 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473818,474,603 - 18,585,109 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
STRN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38236,837,698 - 36,966,536 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl236,837,698 - 36,966,536 (-)EnsemblGRCh38hg38GRCh38
GRCh37237,064,841 - 37,193,679 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36236,928,976 - 37,047,119 (-)NCBINCBI36Build 36hg18NCBI36
Build 34236,987,122 - 37,105,266NCBI
Celera236,916,520 - 37,034,632 (-)NCBICelera
Cytogenetic Map2p22.2NCBI
HuRef236,805,145 - 36,933,870 (-)NCBIHuRef
CHM1_1236,994,082 - 37,122,881 (-)NCBICHM1_1
T2T-CHM13v2.0236,844,882 - 36,973,674 (-)NCBIT2T-CHM13v2.0
Strn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391778,957,327 - 79,043,990 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1778,957,342 - 79,044,625 (-)EnsemblGRCm39 Ensembl
GRCm381778,649,898 - 78,737,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1778,649,913 - 78,737,196 (-)EnsemblGRCm38mm10GRCm38
MGSCv371779,053,304 - 79,135,900 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361778,559,022 - 78,641,618 (-)NCBIMGSCv36mm8
Celera1782,961,171 - 83,054,539 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1749.54NCBI
Strn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8622,087,419 - 22,174,284 (+)NCBIGRCr8
mRatBN7.2616,335,265 - 16,422,159 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl616,335,358 - 16,417,083 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx616,644,013 - 16,725,908 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0616,966,222 - 17,048,119 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0616,447,405 - 16,530,225 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.061,232,729 - 1,319,603 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl61,237,758 - 1,319,541 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.061,223,200 - 1,310,035 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.461,428,548 - 1,510,817 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1838,404,106 - 38,404,723 (+)NCBI
Celera615,984,038 - 16,065,613 (+)NCBICelera
Cytogenetic Map6q12NCBI
Strn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554414,682,200 - 4,781,275 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554414,682,200 - 4,781,236 (-)NCBIChiLan1.0ChiLan1.0
STRN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21289,514,075 - 89,636,703 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A89,518,060 - 89,640,679 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A36,870,487 - 36,993,103 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A37,632,899 - 37,713,550 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A37,637,543 - 37,713,550 (-)Ensemblpanpan1.1panPan2
STRN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11729,264,693 - 29,364,273 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1729,272,833 - 29,332,869 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1729,083,296 - 29,179,262 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01729,918,572 - 30,014,742 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1729,918,576 - 30,013,760 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11729,146,408 - 29,242,571 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01729,208,066 - 29,304,578 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01729,427,442 - 29,523,408 (-)NCBIUU_Cfam_GSD_1.0
Strn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629242,606,057 - 42,714,700 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366631,271,548 - 1,377,655 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366631,271,549 - 1,377,609 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STRN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3103,249,884 - 103,351,902 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13103,249,826 - 103,364,750 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23109,829,466 - 109,935,208 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STRN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11470,437,593 - 70,563,631 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1470,437,570 - 70,558,013 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604541,395,122 - 41,516,122 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021256   ⟹   ENSHGLP00000021053
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473818,476,522 - 18,585,160 (-)Ensembl
RefSeq Acc Id: XM_004839292   ⟹   XP_004839349
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473818,474,603 - 18,585,107 (-)NCBI
RefSeq Acc Id: XM_013070172   ⟹   XP_012925626
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473818,474,603 - 18,585,108 (-)NCBI
RefSeq Acc Id: XM_021253721   ⟹   XP_021109380
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473818,474,603 - 18,585,109 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004839349 (Get FASTA)   NCBI Sequence Viewer  
  XP_012925626 (Get FASTA)   NCBI Sequence Viewer  
  XP_021109380 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB07442 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021053
Reference Protein Sequences
RefSeq Acc Id: XP_021109380   ⟸   XM_021253721
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012925626   ⟸   XM_013070172
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004839349   ⟸   XM_004839292
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000021053   ⟸   ENSHGLT00000021256


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015041 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021256 ENTREZGENE
NCBI Gene Strn ENTREZGENE