Catsper3 (cation channel sperm associated 3) - Rat Genome Database

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Gene: Catsper3 (cation channel sperm associated 3) Heterocephalus glaber
Analyze
Symbol: Catsper3
Name: cation channel sperm associated 3
RGD ID: 18934792
Description: ENCODES a protein that exhibits voltage-gated calcium channel activity (ortholog); INVOLVED IN establishment of localization in cell (ortholog); flagellated sperm motility (ortholog); sodium ion transport (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN acrosomal vesicle (ortholog); CatSper complex (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cation channel sperm-associated protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,050,715 - 12,114,160 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,050,823 - 12,084,546 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Catsper3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,050,715 - 12,114,160 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,050,823 - 12,084,546 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CATSPER3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,967,907 - 135,011,696 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,967,907 - 135,011,696 (+)EnsemblGRCh38hg38GRCh38
GRCh375134,303,597 - 134,347,386 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365134,331,513 - 134,375,285 (+)NCBINCBI36Build 36hg18NCBI36
Build 345134,331,512 - 134,375,285NCBI
Celera5130,427,337 - 130,471,182 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5129,491,536 - 129,535,385 (+)NCBIHuRef
CHM1_15133,736,243 - 133,780,066 (+)NCBICHM1_1
T2T-CHM13v2.05135,494,874 - 135,538,709 (+)NCBIT2T-CHM13v2.0
Catsper3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,932,313 - 55,971,861 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,932,381 - 55,956,811 (+)EnsemblGRCm39 Ensembl
GRCm381355,784,500 - 55,824,048 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,784,568 - 55,808,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv371355,885,940 - 55,910,359 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,794,201 - 55,818,620 (+)NCBIMGSCv36mm8
Celera1356,835,127 - 56,859,609 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
Catsper3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,820,738 - 8,846,063 (-)NCBIGRCr8
mRatBN7.2178,810,122 - 8,840,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,815,561 - 8,840,864 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx178,830,656 - 8,856,459 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,363,260 - 10,385,736 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0178,827,039 - 8,852,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,900,034 - 8,925,385 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,900,036 - 8,925,503 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,065,010 - 11,090,156 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41714,856,781 - 14,891,047 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11714,857,795 - 14,919,947 (-)NCBI
Celera178,897,756 - 8,923,042 (-)NCBICelera
Cytogenetic Map17p14NCBI
Catsper3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540830,150,197 - 30,179,872 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540830,150,736 - 30,179,834 (+)NCBIChiLan1.0ChiLan1.0
CATSPER3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24130,258,105 - 130,308,793 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15128,394,688 - 128,448,357 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05130,362,139 - 130,406,888 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15136,503,846 - 136,548,162 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5136,503,846 - 136,548,162 (+)Ensemblpanpan1.1panPan2
CATSPER3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11123,018,770 - 23,057,945 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1123,021,663 - 23,052,820 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,768,102 - 21,807,475 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01123,825,102 - 23,864,516 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1123,828,241 - 23,859,391 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11122,524,303 - 22,563,684 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01122,390,242 - 22,429,630 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01123,032,998 - 23,072,408 (+)NCBIUU_Cfam_GSD_1.0
Catsper3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,137,841 - 123,169,698 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365972,166,262 - 2,194,550 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365972,164,339 - 2,194,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CATSPER3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2137,139,749 - 137,175,305 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12137,139,743 - 137,175,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap2q27-28NCBI
CATSPER3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12337,740,072 - 37,791,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2337,743,673 - 37,791,176 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603440,124,763 - 40,171,804 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026197   ⟹   ENSHGLP00000025967
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473312,050,715 - 12,114,160 (-)Ensembl
RefSeq Acc Id: XM_004836218   ⟹   XP_004836275
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473312,050,832 - 12,084,546 (-)NCBI
RefSeq Acc Id: XM_021238600   ⟹   XP_021094259
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473312,050,827 - 12,084,546 (-)NCBI
RefSeq Acc Id: XM_021238608   ⟹   XP_021094267
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473312,050,823 - 12,084,546 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004836275 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094259 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094267 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025967
Reference Protein Sequences
RefSeq Acc Id: XP_021094267   ⟸   XM_021238608
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021094259   ⟸   XM_021238600
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004836275   ⟸   XM_004836218
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000025967   ⟸   ENSHGLT00000026197


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018485 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026197 ENTREZGENE
NCBI Gene Catsper3 ENTREZGENE