Slc4a10 (solute carrier family 4 member 10) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slc4a10 (solute carrier family 4 member 10) Heterocephalus glaber
Analyze
Symbol: Slc4a10
Name: solute carrier family 4 member 10
RGD ID: 18934002
Description: ENCODES a protein that exhibits sodium,bicarbonate:chloride antiporter activity (ortholog); INVOLVED IN brain morphogenesis (ortholog); locomotory exploration behavior (ortholog); multicellular organism growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cognitive disorder (ortholog); epilepsy (ortholog); FOUND IN apical dendrite (ortholog); apical plasma membrane (ortholog); axon terminus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium-driven chloride bicarbonate exchanger
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247323,540,954 - 3,849,863 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247323,541,525 - 3,849,805 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc4a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247323,540,954 - 3,849,863 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247323,541,525 - 3,849,805 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC4A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382161,624,416 - 161,985,270 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2161,424,332 - 161,985,282 (+)EnsemblGRCh38hg38GRCh38
GRCh372162,480,926 - 162,841,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362162,189,091 - 162,550,032 (+)NCBINCBI36Build 36hg18NCBI36
Build 342162,306,452 - 162,665,750NCBI
Celera2156,091,092 - 156,452,030 (+)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2154,363,681 - 154,723,673 (+)NCBIHuRef
CHM1_12162,486,707 - 162,847,707 (+)NCBICHM1_1
T2T-CHM13v2.02162,077,534 - 162,441,869 (+)NCBIT2T-CHM13v2.0
Slc4a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39261,876,815 - 62,157,087 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl261,876,806 - 62,157,074 (+)EnsemblGRCm39 Ensembl
GRCm38262,046,472 - 62,326,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl262,046,462 - 62,326,730 (+)EnsemblGRCm38mm10GRCm38
MGSCv37261,884,597 - 62,164,800 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36261,847,433 - 62,127,565 (+)NCBIMGSCv36mm8
Celera263,750,240 - 64,018,815 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map235.79NCBI
Slc4a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8367,050,925 - 67,367,637 (+)NCBIGRCr8
mRatBN7.2346,665,076 - 46,959,088 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl346,665,265 - 46,957,268 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx350,018,426 - 50,311,930 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0358,601,943 - 58,895,450 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0356,375,154 - 56,668,478 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0347,995,812 - 48,287,897 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl347,995,959 - 48,287,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0354,662,196 - 54,953,988 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4343,979,103 - 44,274,283 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1343,875,474 - 44,170,655 (+)NCBI
Celera346,306,173 - 46,598,361 (+)NCBICelera
Cytogenetic Map3q21NCBI
Slc4a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544911,879,016 - 12,160,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544911,879,070 - 12,159,981 (-)NCBIChiLan1.0ChiLan1.0
SLC4A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21364,199,897 - 64,677,338 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B64,214,868 - 64,692,313 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B48,917,958 - 49,278,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B166,287,216 - 166,647,560 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B166,371,645 - 166,647,554 (+)Ensemblpanpan1.1panPan2
SLC4A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1367,106,897 - 7,392,275 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl367,106,994 - 7,390,398 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,248,181 - 7,533,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0367,235,661 - 7,521,757 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl367,235,750 - 7,521,041 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1367,251,947 - 7,536,970 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0367,295,870 - 7,581,750 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0367,404,242 - 7,689,637 (+)NCBIUU_Cfam_GSD_1.0
Slc4a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303124,268,167 - 124,549,520 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646917,068,175 - 17,349,782 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646917,068,179 - 17,349,563 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1568,224,395 - 68,656,309 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11568,342,607 - 68,655,009 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21575,988,553 - 76,105,143 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11047,029,924 - 47,390,116 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1047,030,231 - 47,390,123 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040152,134,807 - 152,512,388 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004835862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004835867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013076132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013076134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013076138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013076141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013076147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013076148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01005490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01005503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01003466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000023949   ⟹   ENSHGLP00000023731
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247323,540,954 - 3,849,863 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000023950   ⟹   ENSHGLP00000023732
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247323,540,954 - 3,849,863 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000023951   ⟹   ENSHGLP00000023733
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247323,542,854 - 3,849,607 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000023952   ⟹   ENSHGLP00000023734
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247323,547,782 - 3,849,607 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000023953   ⟹   ENSHGLP00000023735
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247323,547,782 - 3,707,240 (-)Ensembl
RefSeq Acc Id: XM_004835862   ⟹   XP_004835919
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,542,854 - 3,751,484 (-)NCBI
RefSeq Acc Id: XM_004835867   ⟹   XP_004835924
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,542,854 - 3,751,485 (-)NCBI
RefSeq Acc Id: XM_013076132   ⟹   XP_012931586
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,541,525 - 3,849,804 (-)NCBI
RefSeq Acc Id: XM_013076134   ⟹   XP_012931588
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,541,525 - 3,849,805 (-)NCBI
RefSeq Acc Id: XM_013076138   ⟹   XP_012931592
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,541,525 - 3,849,804 (-)NCBI
RefSeq Acc Id: XM_013076141   ⟹   XP_012931595
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,541,525 - 3,849,804 (-)NCBI
RefSeq Acc Id: XM_013076147   ⟹   XP_012931601
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,541,525 - 3,849,804 (-)NCBI
RefSeq Acc Id: XM_013076148   ⟹   XP_012931602
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,541,525 - 3,849,805 (-)NCBI
RefSeq Acc Id: XM_021265616   ⟹   XP_021121275
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,542,854 - 3,849,804 (-)NCBI
RefSeq Acc Id: XM_021265623   ⟹   XP_021121282
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247323,542,854 - 3,849,804 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012931602   ⟸   XM_013076148
- Peptide Label: isoform X9
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931588   ⟸   XM_013076134
- Peptide Label: isoform X2
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931601   ⟸   XM_013076147
- Peptide Label: isoform X8
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931586   ⟸   XM_013076132
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931595   ⟸   XM_013076141
- Peptide Label: isoform X6
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931592   ⟸   XM_013076138
- Peptide Label: isoform X5
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121275   ⟸   XM_021265616
- Peptide Label: isoform X4
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121282   ⟸   XM_021265623
- Peptide Label: isoform X7
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835924   ⟸   XM_004835867
- Peptide Label: isoform X10
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835919   ⟸   XM_004835862
- Peptide Label: isoform X3
- UniProtKB: A0A0P6K539 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023734   ⟸   ENSHGLT00000023952
RefSeq Acc Id: ENSHGLP00000023731   ⟸   ENSHGLT00000023949
RefSeq Acc Id: ENSHGLP00000023732   ⟸   ENSHGLT00000023950
RefSeq Acc Id: ENSHGLP00000023733   ⟸   ENSHGLT00000023951
RefSeq Acc Id: ENSHGLP00000023735   ⟸   ENSHGLT00000023953


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016931 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023949 ENTREZGENE
  ENSHGLT00000023951 ENTREZGENE
Gene3D-CATH Helical hairpin bin UniProtKB/TrEMBL
InterPro Band3_cytoplasmic_dom UniProtKB/TrEMBL
  HCO3_transpt_C UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/TrEMBL
  Na/HCO3_transpt UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/TrEMBL
NCBI Gene Slc4a10 ENTREZGENE
PANTHER PTHR11453 UniProtKB/TrEMBL
  SODIUM-DRIVEN CHLORIDE BICARBONATE EXCHANGER UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/TrEMBL
PRINTS HCO3TRNSPORT UniProtKB/TrEMBL
  NAHCO3TRSPRT UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/TrEMBL
UniProt A0A0P6K539 ENTREZGENE, UniProtKB/TrEMBL