Snapc4 (small nuclear RNA activating complex polypeptide 4) - Rat Genome Database

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Gene: Snapc4 (small nuclear RNA activating complex polypeptide 4) Heterocephalus glaber
Analyze
Symbol: Snapc4
Name: small nuclear RNA activating complex polypeptide 4
RGD ID: 18930324
Description: ENCODES a protein that exhibits DNA binding (ortholog); RNA polymerase II general transcription initiation factor activity (ortholog); RNA polymerase III general transcription initiation factor activity (ortholog); INVOLVED IN snRNA transcription by RNA polymerase II (inferred); snRNA transcription by RNA polymerase III (inferred); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN nucleus (inferred); snRNA-activating protein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: snRNA-activating protein complex subunit 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,543,498 - 1,561,178 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,542,979 - 1,561,164 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snapc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,543,498 - 1,561,178 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,542,979 - 1,561,164 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNAPC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,375,571 - 136,400,170 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,375,567 - 136,400,176 (-)EnsemblGRCh38hg38GRCh38
GRCh379139,270,023 - 139,294,622 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,389,850 - 138,412,710 (-)NCBINCBI36Build 36hg18NCBI36
Build 349136,545,865 - 136,569,086NCBI
Celera9109,784,965 - 109,807,827 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9108,729,385 - 108,752,220 (-)NCBIHuRef
CHM1_19139,418,225 - 139,441,093 (-)NCBICHM1_1
T2T-CHM13v2.09148,604,905 - 148,629,504 (-)NCBIT2T-CHM13v2.0
Snapc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,252,777 - 26,270,666 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,252,777 - 26,270,665 (-)EnsemblGRCm39 Ensembl
GRCm38226,362,765 - 26,380,661 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,362,765 - 26,380,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,218,285 - 26,236,173 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,184,783 - 26,202,628 (-)NCBIMGSCv36mm8
Celera226,080,406 - 26,098,304 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.87NCBI
Snapc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,580,157 - 29,598,440 (-)NCBIGRCr8
mRatBN7.239,182,061 - 9,200,819 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,182,067 - 9,199,518 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx312,235,453 - 12,253,026 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,818,683 - 20,836,256 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0319,074,021 - 19,091,593 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,808,596 - 3,827,425 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,809,407 - 3,824,284 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.039,169,824 - 9,188,180 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,535,296 - 4,552,793 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.134,536,105 - 4,552,777 (-)NCBI
Celera34,001,978 - 4,020,230 (-)NCBICelera
Cytogenetic Map3p13NCBI
Snapc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,330,293 - 4,350,012 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,330,579 - 4,349,136 (+)NCBIChiLan1.0ChiLan1.0
SNAPC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,986,048 - 3,010,973 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,988,380 - 3,013,308 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,448,180 - 107,473,022 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,427,943 - 136,452,868 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9136,428,732 - 136,450,653 (-)Ensemblpanpan1.1panPan2
SNAPC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,090,615 - 49,110,763 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,091,636 - 49,110,767 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,341,199 - 48,361,450 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,967,283 - 49,987,524 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,967,675 - 49,987,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,747,835 - 48,768,076 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,041,984 - 49,062,245 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,089,882 - 49,109,773 (+)NCBIUU_Cfam_GSD_1.0
Snapc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,948,898 - 201,969,769 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,405,275 - 1,425,248 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,405,306 - 1,428,222 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAPC4
(Sus scrofa - pig)		 No map positions available.
SNAPC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,801,975 - 1,829,823 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,802,937 - 1,829,968 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,386,543 - 3,414,358 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027392   ⟹   ENSHGLP00000027151
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247601,543,498 - 1,561,178 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000027393   ⟹   ENSHGLP00000027152
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247601,543,498 - 1,559,769 (-)Ensembl
RefSeq Acc Id: XM_004848910   ⟹   XP_004848967
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,542,979 - 1,560,330 (-)NCBI
RefSeq Acc Id: XM_004848911   ⟹   XP_004848968
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,542,979 - 1,561,102 (-)NCBI
RefSeq Acc Id: XM_013073764   ⟹   XP_012929218
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,542,979 - 1,560,975 (-)NCBI
RefSeq Acc Id: XM_013073765   ⟹   XP_012929219
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,542,979 - 1,561,164 (-)NCBI
RefSeq Acc Id: XM_021261694   ⟹   XP_021117353
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,542,979 - 1,561,102 (-)NCBI
RefSeq Acc Id: XR_001183783
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,542,979 - 1,561,102 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012929219   ⟸   XM_013073765
- Peptide Label: isoform X1
- UniProtKB: G5B6B4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004848968   ⟸   XM_004848911
- Peptide Label: isoform X1
- UniProtKB: G5B6B4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021117353   ⟸   XM_021261694
- Peptide Label: isoform X1
- UniProtKB: G5B6B4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929218   ⟸   XM_013073764
- Peptide Label: isoform X3
- UniProtKB: G5B6B4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004848967   ⟸   XM_004848910
- Peptide Label: isoform X2
- UniProtKB: G5B6B4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027151   ⟸   ENSHGLT00000027392
RefSeq Acc Id: ENSHGLP00000027152   ⟸   ENSHGLT00000027393


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019312 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027392 ENTREZGENE
  ENSHGLT00000027393 ENTREZGENE
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Myb_dom UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
NCBI Gene Snapc4 ENTREZGENE
PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
  SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
Pfam Myb_DNA-bind_6 UniProtKB/TrEMBL
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain-like UniProtKB/TrEMBL
UniProt G5B6B4 ENTREZGENE, UniProtKB/TrEMBL