Lrrc24 (leucine rich repeat containing 24) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Lrrc24 (leucine rich repeat containing 24) Heterocephalus glaber
Analyze
Symbol: Lrrc24
Name: leucine rich repeat containing 24
RGD ID: 18930013
Description: INVOLVED IN positive regulation of synapse assembly (ortholog); ASSOCIATED WITH Baller-Gerold syndrome (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat-containing protein 24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,336,401 - 12,341,422 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,336,384 - 12,341,244 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Lrrc24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,336,401 - 12,341,422 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,336,384 - 12,341,244 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LRRC24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,522,388 - 144,527,033 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,522,388 - 144,527,033 (-)EnsemblGRCh38hg38GRCh38
GRCh378145,747,772 - 145,752,417 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,718,580 - 145,723,216 (-)NCBINCBI36Build 36hg18NCBI36
Celera8141,923,441 - 141,928,096 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,861,246 - 140,865,901 (-)NCBIHuRef
CHM1_18145,785,951 - 145,790,606 (-)NCBICHM1_1
T2T-CHM13v2.08145,692,574 - 145,697,219 (-)NCBIT2T-CHM13v2.0
Lrrc24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,599,476 - 76,606,373 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,599,476 - 76,606,373 (-)EnsemblGRCm39 Ensembl
GRCm381576,715,276 - 76,722,173 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,715,276 - 76,722,173 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,545,706 - 76,552,603 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,542,531 - 76,549,428 (-)NCBIMGSCv36mm8
Celera1578,208,886 - 78,215,783 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.28NCBI
Lrrc24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,317,935 - 110,325,201 (-)NCBIGRCr8
mRatBN7.27108,437,296 - 108,444,561 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,437,296 - 108,444,438 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,179,228 - 110,186,227 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,402,802 - 112,409,802 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,363,539 - 112,370,540 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,779,733 - 117,786,872 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,779,620 - 117,786,872 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,767,712 - 117,774,850 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,766,704 - 114,775,147 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,801,019 - 114,805,994 (-)NCBI
Celera7104,787,181 - 104,793,930 (-)NCBICelera
Cytogenetic Map7q34NCBI
Lrrc24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,146,712 - 3,150,141 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,146,712 - 3,151,828 (-)NCBIChiLan1.0ChiLan1.0
LRRC24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27162,014,570 - 162,020,244 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,543,901 - 137,546,495 (-)NCBINHGRI_mPanPan1
LRRC24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,941,483 - 37,943,866 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,940,594 - 37,947,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,901,831 - 37,907,263 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,414,816 - 38,420,249 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,414,887 - 38,417,919 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,106,760 - 38,112,190 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,215,174 - 38,220,601 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,691,653 - 38,697,087 (-)NCBIUU_Cfam_GSD_1.0
Lrrc24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303322,548 - 325,334 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,748,770 - 7,751,127 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,746,745 - 7,751,433 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4277,626 - 282,584 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14277,632 - 282,589 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24368,634 - 373,592 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,736,707 - 138,741,362 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,732,525 - 138,739,986 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,113,503 - 1,118,210 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000013970   ⟹   ENSHGLP00000013829
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473512,336,401 - 12,341,422 (+)Ensembl
RefSeq Acc Id: XM_004837677   ⟹   XP_004837734
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473512,338,465 - 12,341,244 (+)NCBI
RefSeq Acc Id: XM_004837680   ⟹   XP_004837737
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473512,336,384 - 12,341,244 (+)NCBI
RefSeq Acc Id: XM_021250084   ⟹   XP_021105743
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473512,336,384 - 12,341,244 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004837734 (Get FASTA)   NCBI Sequence Viewer  
  XP_004837737 (Get FASTA)   NCBI Sequence Viewer  
  XP_021105743 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013829
GenBank Protein JAN99603 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021105743   ⟸   XM_021250084
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J5R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004837737   ⟸   XM_004837680
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J5R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004837734   ⟸   XM_004837677
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J5R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000013829   ⟸   ENSHGLT00000013970


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009883 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000013970 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Lrrc24 ENTREZGENE
PANTHER KEKKON 5, ISOFORM A UniProtKB/TrEMBL
  SYNAPTIC ADHESION-LIKE MOLECULE SALM UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A0P6J5R5 ENTREZGENE, UniProtKB/TrEMBL