LRRC24 (leucine rich repeat containing 24)

Gene: LRRC24 (leucine rich repeat containing 24) Chlorocebus sabaeus

Analyze

Symbol:

LRRC24

Name:

leucine rich repeat containing 24

RGD ID:

18752885

Description:

INVOLVED IN positive regulation of synapse assembly (ortholog); ASSOCIATED WITH Baller-Gerold syndrome (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat-containing protein 24

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	138,736,707 - 138,741,362 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	138,732,525 - 138,739,986 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	1,113,503 - 1,118,210 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Baller-Gerold syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of synapse assembly (IEA,ISO)

Cellular Component

membrane (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LRRC24
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	138,736,707 - 138,741,362 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	138,732,525 - 138,739,986 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	1,113,503 - 1,118,210 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LRRC24
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	144,522,388 - 144,527,033 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	144,522,388 - 144,527,033 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	145,747,772 - 145,752,417 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	145,718,580 - 145,723,216 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	141,923,441 - 141,928,096 (-)	NCBI		Celera
Cytogenetic Map	8	q24.3	NCBI
HuRef	8	140,861,246 - 140,865,901 (-)	NCBI		HuRef
CHM1_1	8	145,785,951 - 145,790,606 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	145,692,574 - 145,697,219 (-)	NCBI		T2T-CHM13v2.0

Lrrc24
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	76,599,476 - 76,606,373 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	76,599,476 - 76,606,373 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	76,715,276 - 76,722,173 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	76,715,276 - 76,722,173 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	76,545,706 - 76,552,603 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	76,542,531 - 76,549,428 (-)	NCBI		MGSCv36	mm8
Celera	15	78,208,886 - 78,215,783 (-)	NCBI		Celera
Cytogenetic Map	15	D3	NCBI
cM Map	15	36.28	NCBI

Lrrc24
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	110,317,935 - 110,325,201 (-)	NCBI		GRCr8
mRatBN7.2	7	108,437,296 - 108,444,561 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	108,437,296 - 108,444,438 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	110,179,228 - 110,186,227 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	112,402,802 - 112,409,802 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	112,363,539 - 112,370,540 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	117,779,733 - 117,786,872 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	117,779,620 - 117,786,872 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	117,767,712 - 117,774,850 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	114,766,704 - 114,775,147 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	114,801,019 - 114,805,994 (-)	NCBI
Celera	7	104,787,181 - 104,793,930 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Lrrc24
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	3,146,712 - 3,150,141 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	3,146,712 - 3,151,828 (-)	NCBI	ChiLan1.0	ChiLan1.0

LRRC24
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	162,014,570 - 162,020,244 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	137,543,901 - 137,546,495 (-)	NCBI		NHGRI_mPanPan1

LRRC24
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	37,941,483 - 37,943,866 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	37,940,594 - 37,947,991 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	37,901,831 - 37,907,263 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	38,414,816 - 38,420,249 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	38,414,887 - 38,417,919 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	38,106,760 - 38,112,190 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	38,215,174 - 38,220,601 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	38,691,653 - 38,697,087 (-)	NCBI		UU_Cfam_GSD_1.0

Lrrc24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	322,548 - 325,334 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	7,748,770 - 7,751,127 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	7,746,745 - 7,751,433 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC24
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	277,626 - 282,584 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	277,632 - 282,589 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	368,634 - 373,592 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Lrrc24
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	12,336,401 - 12,341,422 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	12,336,384 - 12,341,244 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	23		29
Low	13	20	31
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008001938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000006303 ⟹ ENSCSAP00000004508

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	8	138,732,525 - 138,739,986 (-)	Ensembl

RefSeq Acc Id:

XM_008001944 ⟹ XP_008000135

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	138,736,707 - 138,741,362 (-)	NCBI
Vero_WHO_p1.0	NW_023666039	1,113,503 - 1,118,210 (+)	NCBI

Sequence:

show sequence

TCCCAGCCCGGCCGCTGCTCAGACCGGGGCCGCCACCTGCACGGCGGGGGAGCCGCTCGCCGCG
GGAGCGTCAGGAGGGCACGCGTCCGCGGCTGAACCGCGGAAGGGCCGGTGAGGAGCTGGGCCTC
AGGAGATGGCCCCGGGGGCCCCCGCGCTGCTGCTGCTGCTGCTGCTGCTACTGCCGCCCCGCAC
CGCCGGCTGCCCAGCAGCCTGTCGCTGCTACAGCGCCACAGTGGAGTGCGGCGCCCTGCGGTTG
CGTGTCGTCCCGCTGGGAATCCCGCCAGGGACGCAGACACTGTTCCTGCAGGACAACAACATCG
CGCGCCTGGAGCCAGGAGCCCTGGCGCCGCTCGCCGCTCTGCGGCGGCTCTACCTGCACAACAA
CAGCCTGCGCGCCCTGGAGGCCGGCGCCTTCCGCGCGCAGCCGCGCCTGCTGGAGCTGGCGCTC
ACCAGCAACCGGCTGCGCGCCTTGCGCAGCGGCGCCTTCGCAGGCCTGGCCCAGCTGCGCGTGC
TCTACCTGGCGGGCAACCAGCTGGCGCGGCTGCTGGATTTCACCTTCTTGCACCTGCCGCGACT
GCAGGAGCTTCACCTGCAAGAAAACAGCATTGAGCTGCTGGAGGACCAGGCTCTAGCGGGGCTG
TCCTCCCTAGCACTGCTGGACCTCAGCAGGAACCAGCTGGGTACCATCAGCCGAGAGGCGCTGC
AGCCCCTGGCCAGTCTGCAAGTCCTGCGCCTCACAGAGAACCCATGGCGCTGTGACTGCGCCCT
GCACTGGCTGGGTGCCTGGATCAAGGAGGGCGGCCAGCGGCTGCTCACCTCCAGGGACAGGAAG
ATTATGTGTGCAGAGCCCCCGCGCCTGGCGCTCCAGAGTCTCCTGGACGTATCCCACAGCAGCC
TCATCTGCATTCCGCCCTCTGTCCACGTGCAGCCGCTGGAGCTCACAGCCAACCTGGGTGAGGA
CCTGCGGGTTGCCTGCCAAGCCTCCGGCTACCCGCAGCCATTGGTGACCTGGAGAAAGGTGCCC
CAGCCTCGCGAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGTGGGGCGCCGGGCCTGGGCG
GACACTCGGCATCCGACACGGGCAGTGGCATGCTCTTCCTCAGCAACATCACGCTGGCCCATGC
CGGCAAGTACGAGTGCGAGGCCTCCAATGCTGGTGGCGCTGCCCGCGTGCCCTTCCGGCTCCTG
GTCAACGCGTCCCGGCAGCAGCCGCAGCAGCCCGCGCAACCGCCACCTCCTGCCGCCCGCCCCG
CTGGTCGCGAGTCCCGGCCCGAGGCGGGAAGCATGGCCTTCCGCGCCCTGGGCCTGGCCACGCA
GACGGCCATTGCGGCGGCCATCGCGCTGCTGGCGCTCACGGCGCTGCTCCTGGTCGCCATGATC
TGTCGCCGGCGCCGCAGGCGAAAAAAGGCGCGGGGGCCACCGGGGGAGGGCGCGCTGTTCGTCA
ACGACTACTCGGACGGCCCCTGCACGTTCGCACAGCTAGAGGAGCTCCGCGACGAGCGTGGACA
CGAGATGTTTGTCATCAACCGCTCCAAGCCGCTCTTCGCCGAGGGTCCGGCGGAGGCGCCCGCG
GACTGCGGACCAGCGGAGGGGGCGGGGCCGGGACTCCGCGTGCCCCCGCCGGTCGCCTACGAAA
TCCACTGCTAGGGCGGCGGGCGCGGGCAGATGACGTGGGCGCTGGGGATTGGCCGGCGCGGCCG
CGCACATGCTCCGTCAGTAAAGGTGGAAGCCGCGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008000135	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000004508.1

RefSeq Acc Id:	XP_008000135 ⟸ XM_008001944
- UniProtKB:	A0A0D9R7B9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000004508 ⟸ ENSCSAT00000006303

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000008249	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000006303.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
NCBI Gene	LRRC24	ENTREZGENE
PANTHER	SYNAPTIC ADHESION-LIKE MOLECULE SALM	UniProtKB/TrEMBL
Pfam	Ig_3	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	LRR	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A0D9R7B9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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