Gbx2 (gastrulation brain homeobox 2) - Rat Genome Database

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Gene: Gbx2 (gastrulation brain homeobox 2) Heterocephalus glaber
Analyze
Symbol: Gbx2
Name: gastrulation brain homeobox 2
RGD ID: 18929897
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II core promoter sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN autonomic nervous system development (ortholog); axon guidance (ortholog); branching involved in blood vessel morphogenesis (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Bethlem Myopathy 1A (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein GBX-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248471,879,007 - 1,881,669 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248471,878,946 - 1,881,794 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gbx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248471,879,007 - 1,881,669 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248471,878,946 - 1,881,794 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GBX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,161,340 - 236,168,386 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,165,236 - 236,168,386 (-)EnsemblGRCh38hg38GRCh38
GRCh372237,073,879 - 237,077,029 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,739,046 - 236,741,391 (-)NCBINCBI36Build 36hg18NCBI36
Build 342236,856,306 - 236,858,652NCBI
Celera2230,787,441 - 230,789,786 (-)NCBICelera
Cytogenetic Map2q37.2NCBI
HuRef2228,868,880 - 228,871,225 (-)NCBIHuRef
CHM1_12237,080,112 - 237,082,457 (-)NCBICHM1_1
T2T-CHM13v2.02236,651,067 - 236,658,113 (-)NCBIT2T-CHM13v2.0
Gbx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39189,855,684 - 89,858,898 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl189,855,678 - 89,858,901 (-)EnsemblGRCm39 Ensembl
GRCm38189,927,962 - 89,931,176 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl189,927,956 - 89,931,179 (-)EnsemblGRCm38mm10GRCm38
MGSCv37191,824,537 - 91,827,751 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36191,759,133 - 91,762,347 (-)NCBIMGSCv36mm8
Celera192,869,152 - 92,872,368 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map145.06NCBI
Gbx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8997,957,304 - 97,959,883 (-)NCBIGRCr8
mRatBN7.2990,509,633 - 90,512,212 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl990,509,633 - 90,512,212 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx998,936,286 - 98,938,865 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09104,072,186 - 104,074,765 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09102,437,722 - 102,440,301 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0997,063,265 - 97,065,855 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl997,063,728 - 97,065,817 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0996,754,122 - 96,756,543 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4989,034,340 - 89,037,102 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1989,239,950 - 89,240,065 (-)NCBI
Celera988,058,118 - 88,060,697 (-)NCBICelera
Cytogenetic Map9q36NCBI
Gbx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955453538,280 - 540,306 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955453538,066 - 541,415 (+)NCBIChiLan1.0ChiLan1.0
GBX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213138,794,032 - 138,798,437 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B138,808,996 - 138,813,401 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B123,392,499 - 123,399,549 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
GBX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12547,005,509 - 47,008,367 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2547,005,504 - 47,008,512 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2547,508,245 - 47,511,037 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02547,359,565 - 47,362,361 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2547,359,543 - 47,362,930 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12547,267,592 - 47,270,382 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02547,061,156 - 47,063,938 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02547,291,077 - 47,293,871 (-)NCBIUU_Cfam_GSD_1.0
Gbx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303189,066,154 - 189,069,657 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365251,870,195 - 1,873,539 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365251,870,211 - 1,873,536 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GBX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15136,029,070 - 136,032,316 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115136,029,393 - 136,032,568 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215150,464,293 - 150,466,933 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GBX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110122,177,725 - 122,184,448 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10122,182,301 - 122,184,446 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604077,219,450 - 77,225,155 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004868381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01088964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000025709   ⟹   ENSHGLP00000025483
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248471,879,007 - 1,881,669 (-)Ensembl
RefSeq Acc Id: XM_004868381   ⟹   XP_004868438
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248471,878,946 - 1,881,794 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004868438 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025483
Reference Protein Sequences
RefSeq Acc Id: XP_004868438   ⟸   XM_004868381
RefSeq Acc Id: ENSHGLP00000025483   ⟸   ENSHGLT00000025709


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018155 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000025709 ENTREZGENE
NCBI Gene Gbx2 ENTREZGENE