Calu (calumenin) - Rat Genome Database

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Gene: Calu (calumenin) Heterocephalus glaber
Analyze
Symbol: Calu
Name: calumenin
RGD ID: 18926220
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); enzyme binding (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN peripheral nervous system axon regeneration (ortholog); response to organic cyclic compound (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); colorectal carcinoma (ortholog); Developmental Disease (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247837,417,505 - 7,448,711 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Calu
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247837,417,505 - 7,448,711 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CALU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387128,739,359 - 128,773,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7128,739,292 - 128,773,400 (+)EnsemblGRCh38hg38GRCh38
GRCh377128,379,413 - 128,413,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,166,672 - 128,198,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 347127,973,386 - 128,005,478NCBI
Celera7123,175,101 - 123,207,285 (+)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7122,740,343 - 122,774,461 (+)NCBIHuRef
CHM1_17128,312,626 - 128,346,717 (+)NCBICHM1_1
T2T-CHM13v2.07130,051,503 - 130,085,553 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27127,762,331 - 127,796,461 (+)NCBI
Calu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,348,105 - 29,376,674 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,348,068 - 29,377,109 (+)EnsemblGRCm39 Ensembl
GRCm38629,348,106 - 29,376,675 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,348,069 - 29,377,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,298,119 - 29,326,675 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36629,298,155 - 29,326,678 (+)NCBIMGSCv36mm8
Celera629,355,300 - 29,383,863 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.36NCBI
Calu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8458,914,456 - 58,941,957 (+)NCBIGRCr8
mRatBN7.2457,949,086 - 57,976,589 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl457,948,997 - 57,976,593 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx462,932,083 - 62,959,657 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0458,848,234 - 58,875,810 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,250,131 - 57,277,707 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,625,611 - 56,653,112 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,625,561 - 56,653,111 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,392,772 - 56,420,273 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,228,617 - 56,256,118 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1456,484,215 - 56,512,241 (+)NCBI
Celera453,057,097 - 53,084,601 (+)NCBICelera
Cytogenetic Map4q22NCBI
Calu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,541,568 - 9,572,266 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554799,541,574 - 9,572,189 (+)NCBIChiLan1.0ChiLan1.0
CALU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26165,543,477 - 165,575,634 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1717,553,664 - 17,585,880 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07120,691,092 - 120,723,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17133,215,235 - 133,247,541 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,223,269 - 133,247,167 (+)Ensemblpanpan1.1panPan2
CALU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,869,946 - 7,899,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,872,076 - 7,925,078 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,556,743 - 7,586,116 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,635,858 - 7,665,254 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,635,858 - 7,671,959 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,840,807 - 7,870,176 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,582,998 - 7,612,128 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,728,236 - 7,757,618 (-)NCBIUU_Cfam_GSD_1.0
Calu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511854,542,168 - 54,574,792 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647915,665,946 - 15,698,560 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647915,665,979 - 15,697,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,841,719 - 19,875,786 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,841,718 - 19,875,804 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,911,135 - 20,945,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CALU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,338,875 - 97,370,947 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2197,338,913 - 97,373,156 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660426,032,895 - 6,065,516 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004856392   ⟹   XP_004856449
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,417,505 - 7,448,711 (-)NCBI
RefSeq Acc Id: XM_004856393   ⟹   XP_004856450
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,417,505 - 7,448,678 (-)NCBI
RefSeq Acc Id: XM_013076523   ⟹   XP_012931977
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,417,505 - 7,448,711 (-)NCBI
RefSeq Acc Id: XM_013076524   ⟹   XP_012931978
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,417,505 - 7,438,562 (-)NCBI
RefSeq Acc Id: XM_021237564   ⟹   XP_021093223
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,417,505 - 7,432,888 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012931977   ⟸   XM_013076523
- Peptide Label: isoform X2
- UniProtKB: G5BH98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856449   ⟸   XM_004856392
- Peptide Label: isoform X1
- UniProtKB: G5BH98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856450   ⟸   XM_004856393
- Peptide Label: isoform X1
- UniProtKB: G5BH98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931978   ⟸   XM_013076524
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021093223   ⟸   XM_021237564
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017204 ENTREZGENE
Ensembl Transcript ENSHGLT00000024356 ENTREZGENE
  ENSHGLT00000024357 ENTREZGENE
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Calu ENTREZGENE
PANTHER CALUMENIN UniProtKB/TrEMBL
  RETICULOCALBIN UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP EF-hand UniProtKB/TrEMBL
UniProt G5BH98 ENTREZGENE, UniProtKB/TrEMBL