CALU (calumenin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: CALU (calumenin) Chlorocebus sabaeus
Analyze
Symbol: CALU
Name: calumenin
RGD ID: 18648456
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); enzyme binding (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN peripheral nervous system axon regeneration (ortholog); response to organic cyclic compound (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); colorectal carcinoma (ortholog); Developmental Disease (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,338,875 - 97,370,947 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2197,338,913 - 97,373,156 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660426,032,895 - 6,065,516 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CALU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,338,875 - 97,370,947 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2197,338,913 - 97,373,156 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660426,032,895 - 6,065,516 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CALU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387128,739,359 - 128,773,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7128,739,292 - 128,773,400 (+)EnsemblGRCh38hg38GRCh38
GRCh377128,379,413 - 128,413,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,166,672 - 128,198,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 347127,973,386 - 128,005,478NCBI
Celera7123,175,101 - 123,207,285 (+)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7122,740,343 - 122,774,461 (+)NCBIHuRef
CHM1_17128,312,626 - 128,346,717 (+)NCBICHM1_1
T2T-CHM13v2.07130,051,503 - 130,085,553 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27127,762,331 - 127,796,461 (+)NCBI
Calu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,348,105 - 29,376,674 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,348,068 - 29,377,109 (+)EnsemblGRCm39 Ensembl
GRCm38629,348,106 - 29,376,675 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,348,069 - 29,377,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,298,119 - 29,326,675 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36629,298,155 - 29,326,678 (+)NCBIMGSCv36mm8
Celera629,355,300 - 29,383,863 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.36NCBI
Calu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8458,914,456 - 58,941,957 (+)NCBIGRCr8
mRatBN7.2457,949,086 - 57,976,589 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl457,948,997 - 57,976,593 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx462,932,083 - 62,959,657 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0458,848,234 - 58,875,810 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,250,131 - 57,277,707 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,625,611 - 56,653,112 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,625,561 - 56,653,111 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,392,772 - 56,420,273 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,228,617 - 56,256,118 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1456,484,215 - 56,512,241 (+)NCBI
Celera453,057,097 - 53,084,601 (+)NCBICelera
Cytogenetic Map4q22NCBI
Calu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,541,568 - 9,572,266 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554799,541,574 - 9,572,189 (+)NCBIChiLan1.0ChiLan1.0
CALU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26165,543,477 - 165,575,634 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1717,553,664 - 17,585,880 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07120,691,092 - 120,723,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17133,215,235 - 133,247,541 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,223,269 - 133,247,167 (+)Ensemblpanpan1.1panPan2
CALU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,869,946 - 7,899,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,872,076 - 7,925,078 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,556,743 - 7,586,116 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,635,858 - 7,665,254 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,635,858 - 7,671,959 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,840,807 - 7,870,176 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,582,998 - 7,612,128 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,728,236 - 7,757,618 (-)NCBIUU_Cfam_GSD_1.0
Calu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511854,542,168 - 54,574,792 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647915,665,946 - 15,698,560 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647915,665,979 - 15,697,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,841,719 - 19,875,786 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,841,718 - 19,875,804 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,911,135 - 20,945,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Calu
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247837,417,505 - 7,448,711 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 5 60
Low 15
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000008137   ⟹   ENSCSAP00000006291
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2197,338,913 - 97,373,156 (+)Ensembl
RefSeq Acc Id: XM_007982852   ⟹   XP_007981043
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12197,338,875 - 97,370,947 (+)NCBI
Vero_WHO_p1.0NW_0236660426,032,895 - 6,065,516 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007982853   ⟹   XP_007981044
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12197,338,875 - 97,370,947 (+)NCBI
Vero_WHO_p1.0NW_0236660426,032,895 - 6,065,511 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007981043 (Get FASTA)   NCBI Sequence Viewer  
  XP_007981044 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006291
  ENSCSAP00000006291.1
Reference Protein Sequences
RefSeq Acc Id: XP_007981043   ⟸   XM_007982852
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007981044   ⟸   XM_007982853
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000006291   ⟸   ENSCSAT00000008137


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010054 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008137.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
KEGG Report csab:103226866 UniProtKB/TrEMBL
NCBI Gene CALU ENTREZGENE
PANTHER PTHR10827:SF76 UniProtKB/TrEMBL
  RETICULOCALBIN UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0D9RCF2 ENTREZGENE, UniProtKB/TrEMBL