Wdr35 (WD repeat domain 35) - Rat Genome Database

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Gene: Wdr35 (WD repeat domain 35) Heterocephalus glaber
Analyze
Symbol: Wdr35
Name: WD repeat domain 35
RGD ID: 18925946
Description: INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); cellular response to tumor necrosis factor (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); connective tissue disease (ortholog); FOUND IN axoneme (ortholog); intraciliary transport particle A (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 32; TTC32; WD repeat-containing protein 35
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247382,618,738 - 2,623,166 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla_female_1.0 EnsemblNW_0046247382,642,690 - 2,719,744 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247382,618,464 - 2,720,567 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wdr35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247382,618,738 - 2,623,166 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla_female_1.0 EnsemblNW_0046247382,642,690 - 2,719,744 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247382,618,464 - 2,720,567 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
WDR35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38219,910,263 - 19,990,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl219,910,263 - 19,990,105 (-)EnsemblGRCh38hg38GRCh38
GRCh37220,110,024 - 20,189,866 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36219,973,505 - 20,053,365 (-)NCBINCBI36Build 36hg18NCBI36
Build 34220,031,658 - 20,111,512NCBI
Celera219,972,385 - 20,052,221 (-)NCBICelera
Cytogenetic Map2p24.1NCBI
HuRef219,867,423 - 19,947,167 (-)NCBIHuRef
CHM1_1220,039,380 - 20,119,218 (-)NCBICHM1_1
T2T-CHM13v2.0219,943,794 - 20,023,609 (-)NCBIT2T-CHM13v2.0
Wdr35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39129,023,897 - 9,078,848 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl129,023,892 - 9,078,847 (+)EnsemblGRCm39 Ensembl
GRCm38128,973,998 - 9,028,848 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl128,973,892 - 9,028,847 (+)EnsemblGRCm38mm10GRCm38
MGSCv37128,980,807 - 9,035,653 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36128,999,900 - 9,054,855 (+)NCBIMGSCv36mm8
Celera129,360,456 - 9,414,687 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map123.97NCBI
Wdr35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8637,490,557 - 37,550,391 (+)NCBIGRCr8
mRatBN7.2631,771,315 - 31,831,450 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl631,771,360 - 31,831,029 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx632,063,354 - 32,123,025 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0632,379,221 - 32,438,891 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0631,853,826 - 31,913,503 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0634,094,291 - 34,152,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl634,094,306 - 34,151,622 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0643,875,468 - 43,932,876 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4632,522,578 - 32,523,842 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera631,219,791 - 31,278,025 (+)NCBICelera
Cytogenetic Map6q14NCBI
Wdr35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554692,482,353 - 2,546,578 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554692,484,972 - 2,546,562 (-)NCBIChiLan1.0ChiLan1.0
WDR35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212106,537,513 - 106,615,551 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A106,541,562 - 106,619,523 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A19,896,498 - 19,977,295 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A20,014,127 - 20,093,794 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A20,014,127 - 20,093,810 (-)Ensemblpanpan1.1panPan2
WDR35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11714,976,662 - 15,034,918 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1714,977,457 - 15,034,748 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1714,936,610 - 14,994,995 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01715,124,117 - 15,182,623 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1715,124,121 - 15,182,628 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11714,978,142 - 15,036,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01714,984,409 - 15,042,802 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01715,016,240 - 15,074,493 (-)NCBIUU_Cfam_GSD_1.0
Wdr35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629259,403,787 - 59,464,922 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649311,374,671 - 11,436,233 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649311,374,681 - 11,435,792 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3118,209,139 - 118,269,452 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13118,209,112 - 118,279,050 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23126,240,426 - 126,299,259 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11487,732,034 - 87,801,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1487,732,049 - 87,801,852 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604524,429,782 - 24,497,638 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004839041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021253534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01015463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01015464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01015465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01015466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01003934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000008329   ⟹   ENSHGLP00000008240
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247382,618,738 - 2,623,166 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000015637   ⟹   ENSHGLP00000015477
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247382,642,690 - 2,719,744 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000015638   ⟹   ENSHGLP00000015478
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247382,646,503 - 2,719,744 (-)Ensembl
RefSeq Acc Id: XM_004839041   ⟹   XP_004839098
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,625,369 (-)NCBI
RefSeq Acc Id: XM_021253519   ⟹   XP_021109178
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,720,565 (-)NCBI
RefSeq Acc Id: XM_021253520   ⟹   XP_021109179
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,720,566 (-)NCBI
RefSeq Acc Id: XM_021253521   ⟹   XP_021109180
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,720,565 (-)NCBI
RefSeq Acc Id: XM_021253522   ⟹   XP_021109181
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,720,567 (-)NCBI
RefSeq Acc Id: XM_021253523   ⟹   XP_021109182
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,646,517 - 2,720,564 (-)NCBI
RefSeq Acc Id: XM_021253524   ⟹   XP_021109183
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,646,517 - 2,720,564 (-)NCBI
RefSeq Acc Id: XM_021253525   ⟹   XP_021109184
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,720,564 (-)NCBI
RefSeq Acc Id: XM_021253526   ⟹   XP_021109185
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,646,517 - 2,720,564 (-)NCBI
RefSeq Acc Id: XM_021253527   ⟹   XP_021109186
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,720,564 (-)NCBI
RefSeq Acc Id: XM_021253528   ⟹   XP_021109187
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,646,517 - 2,720,564 (-)NCBI
RefSeq Acc Id: XM_021253529   ⟹   XP_021109188
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,619,680 - 2,720,564 (-)NCBI
RefSeq Acc Id: XM_021253530   ⟹   XP_021109189
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,630,432 - 2,720,564 (-)NCBI
RefSeq Acc Id: XM_021253531   ⟹   XP_021109190
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,719,719 (-)NCBI
RefSeq Acc Id: XM_021253532   ⟹   XP_021109191
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,719,719 (-)NCBI
RefSeq Acc Id: XM_021253533   ⟹   XP_021109192
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,618,464 - 2,715,546 (-)NCBI
RefSeq Acc Id: XM_021253534   ⟹   XP_021109193
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247382,646,651 - 2,719,719 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021109181   ⟸   XM_021253522
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021109179   ⟸   XM_021253520
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021109180   ⟸   XM_021253521
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021109178   ⟸   XM_021253519
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021109184   ⟸   XM_021253525
- Peptide Label: isoform X7
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109186   ⟸   XM_021253527
- Peptide Label: isoform X8
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109191   ⟸   XM_021253532
- Peptide Label: isoform X10
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109190   ⟸   XM_021253531
- Peptide Label: isoform X9
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109192   ⟸   XM_021253533
- Peptide Label: isoform X11
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004839098   ⟸   XM_004839041
- Peptide Label: isoform X13
- UniProtKB: G5AZA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109188   ⟸   XM_021253529
- Peptide Label: isoform X8
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109189   ⟸   XM_021253530
- Peptide Label: isoform X8
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109183   ⟸   XM_021253524
- Peptide Label: isoform X6
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109182   ⟸   XM_021253523
- Peptide Label: isoform X5
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109187   ⟸   XM_021253528
- Peptide Label: isoform X8
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109185   ⟸   XM_021253526
- Peptide Label: isoform X8
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109193   ⟸   XM_021253534
- Peptide Label: isoform X12
- UniProtKB: A0A0P6J259 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000008240   ⟸   ENSHGLT00000008329
RefSeq Acc Id: ENSHGLP00000015477   ⟸   ENSHGLT00000015637
RefSeq Acc Id: ENSHGLP00000015478   ⟸   ENSHGLT00000015638


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005960 Ensembl, ENTREZGENE
  ENSHGLG00000011065 Ensembl, ENTREZGENE
  ENSHGLG00000039171 UniProtKB/TrEMBL
  ENSHGLG00100012339 UniProtKB/TrEMBL
  ENSHGLG00100015043 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008329 ENTREZGENE
  ENSHGLT00000015637 ENTREZGENE
  ENSHGLT00000082028 UniProtKB/TrEMBL
  ENSHGLT00100016901 UniProtKB/TrEMBL
  ENSHGLT00100020625 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  1.25.40.470 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro Apc4_WD40_dom UniProtKB/TrEMBL
  Ift122/121 UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_2 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR35 UniProtKB/TrEMBL
KEGG Report hgl:101721184 UniProtKB/TrEMBL
  hgl:101722831 UniProtKB/TrEMBL
NCBI Gene Wdr35 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 32 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 32 UniProtKB/TrEMBL
  WD REPEAT DOMAIN-RELATED UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 55 HOMOLOG UniProtKB/TrEMBL
Pfam ANAPC4_WD40 UniProtKB/TrEMBL
  TPR_2 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PIRSF WD_repeat_p35 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt A0A0P6J259 ENTREZGENE, UniProtKB/TrEMBL
  G5AZA9 ENTREZGENE, UniProtKB/TrEMBL