Pou2af2 (POU class 2 homeobox associating factor 2) - Rat Genome Database

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Gene: Pou2af2 (POU class 2 homeobox associating factor 2) Heterocephalus glaber
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Symbol: Pou2af2
Name: POU class 2 homeobox associating factor 2
RGD ID: 18925003
Description: ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); transcription coactivator activity (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); intellectual disability (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C11orf53 homolog; CUNH11orf53; uncharacterized protein C11orf53 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247846,356,269 - 6,410,924 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Pou2af2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247846,356,269 - 6,410,924 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
POU2AF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811111,245,725 - 111,286,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11111,245,725 - 111,286,401 (+)EnsemblGRCh38hg38GRCh38
GRCh3711111,116,450 - 111,157,126 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611110,631,917 - 110,662,183 (+)NCBINCBI36Build 36hg18NCBI36
Celera11108,279,889 - 108,310,160 (+)NCBICelera
Cytogenetic Map11q23.1NCBI
HuRef11107,051,423 - 107,081,652 (+)NCBIHuRef
CHM1_111111,009,837 - 111,040,110 (+)NCBICHM1_1
T2T-CHM13v2.011111,255,953 - 111,296,584 (+)NCBIT2T-CHM13v2.0
Pou2af2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39951,200,986 - 51,240,224 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl951,200,986 - 51,240,224 (-)EnsemblGRCm39 Ensembl
GRCm38951,289,686 - 51,328,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl951,289,686 - 51,328,924 (-)EnsemblGRCm38mm10GRCm38
MGSCv37951,097,791 - 51,137,022 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36951,041,924 - 51,081,147 (-)NCBIMGSCv36mm8
Celera948,576,872 - 48,616,362 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map928.05NCBI
Pou2af2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8860,504,292 - 60,544,996 (-)NCBIGRCr8
mRatBN7.2851,607,780 - 51,648,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl851,607,763 - 51,648,628 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0855,693,820 - 55,696,856 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl855,694,804 - 55,696,601 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0854,288,887 - 54,330,073 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4854,621,532 - 54,642,099 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera851,152,414 - 51,155,450 (-)NCBICelera
Cytogenetic Map8q23NCBI
Pou2af2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541213,076,854 - 13,079,095 (+)NCBIChiLan1.0ChiLan1.0
POU2AF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29111,999,701 - 112,030,008 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111113,091,755 - 113,122,077 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011106,125,675 - 106,165,907 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111109,981,398 - 110,011,080 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11109,971,255 - 110,011,080 (+)Ensemblpanpan1.1panPan2
POU2AF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1521,749,430 - 21,785,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl521,749,786 - 21,785,287 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha521,671,004 - 21,707,571 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0521,775,350 - 21,811,914 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl521,775,711 - 21,811,180 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1521,835,943 - 21,872,425 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0521,736,068 - 21,772,622 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0521,785,293 - 21,821,811 (-)NCBIUU_Cfam_GSD_1.0
Pou2af2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494793,549,146 - 93,587,542 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366123,118,236 - 3,123,305 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366123,118,204 - 3,123,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POU2AF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl939,024,631 - 39,062,684 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1939,024,067 - 39,065,379 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2943,922,254 - 43,962,911 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POU2AF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11102,591,385 - 102,625,441 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604323,345,939 - 23,452,694 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021237720   ⟹   XP_021093379
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247846,356,269 - 6,410,924 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021093379 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021093379   ⟸   XM_021237720
- UniProtKB: G5CB13 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
InterPro POU2AF2 UniProtKB/TrEMBL
NCBI Gene CUNH11orf53 ENTREZGENE
PANTHER RGD1562914 UniProtKB/TrEMBL
  RGD1562914 UniProtKB/TrEMBL
Pfam DUF5566 UniProtKB/TrEMBL
UniProt G5CB13 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-29 Pou2af2  POU class 2 homeobox associating factor 2  CUNH11orf53  chromosome unknown C11orf53 homolog  Symbol and/or name change 5135510 APPROVED