Birc7 (baculoviral IAP repeat containing 7) - Rat Genome Database

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Gene: Birc7 (baculoviral IAP repeat containing 7) Heterocephalus glaber
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Symbol: Birc7
Name: baculoviral IAP repeat containing 7
RGD ID: 18921583
Description: ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN lens development in camera-type eye (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of tumor necrosis factor-mediated signaling pathway (ortholog); ASSOCIATED WITH adrenocortical carcinoma (ortholog); autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: baculoviral IAP repeat-containing protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474128,937,836 - 28,944,000 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO)
cytoplasm  (ISO)
cytosol  (ISO)
Golgi apparatus  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Birc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474128,937,836 - 28,944,000 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BIRC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,235,905 - 63,240,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,235,883 - 63,240,495 (+)EnsemblGRCh38hg38GRCh38
GRCh372061,867,257 - 61,871,847 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,337,721 - 61,342,299 (+)NCBINCBI36Build 36hg18NCBI36
Build 342061,337,720 - 61,342,299NCBI
Celera2058,544,759 - 58,549,338 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,592,772 - 58,597,397 (+)NCBIHuRef
CHM1_12061,768,290 - 61,772,915 (+)NCBICHM1_1
T2T-CHM13v2.02065,041,538 - 65,046,510 (+)NCBIT2T-CHM13v2.0
Birc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,570,402 - 180,575,803 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,570,816 - 180,575,803 (+)EnsemblGRCm39 Ensembl
GRCm382180,928,609 - 180,934,010 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,929,023 - 180,934,010 (+)EnsemblGRCm38mm10GRCm38
MGSCv372180,663,728 - 180,668,715 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,850,322 - 180,862,738 (+)NCBIMGSCv36mm8
Celera2185,015,239 - 185,020,226 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.53NCBI
Birc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,425,392 - 188,430,174 (+)NCBIGRCr8
mRatBN7.23168,047,824 - 168,052,606 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,047,824 - 168,052,606 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,428,000 - 172,432,781 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,387,091 - 181,391,872 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,048,785 - 178,053,567 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,438,335 - 176,443,864 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,439,199 - 176,443,195 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,150,723 - 180,153,671 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,037,778 - 170,043,277 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3164,532,360 - 164,537,207 (-)NCBICelera
Cytogenetic Map3q43NCBI
Birc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528919,246 - 922,619 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528919,246 - 922,581 (-)NCBIChiLan1.0ChiLan1.0
BIRC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,022,107 - 69,027,217 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,014,113 - 69,019,185 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,618,530 - 59,623,612 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12061,156,871 - 61,161,932 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,157,302 - 61,161,932 (+)Ensemblpanpan1.1panPan2
BIRC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,950,700 - 46,956,375 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,952,474 - 46,955,495 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,136,510 - 46,140,424 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,906,319 - 47,910,219 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,906,319 - 47,909,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,921,701 - 46,925,622 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,045,709 - 47,049,636 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,802,069 - 47,805,983 (+)NCBIUU_Cfam_GSD_1.0
Birc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,164,678 - 195,169,263 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,618,289 - 10,622,931 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,618,347 - 10,622,906 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BIRC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11762,351,663 - 62,356,220 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BIRC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12965,811 - 970,983 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605048,703,511 - 48,708,637 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021254880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01019714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021254880   ⟹   XP_021110539
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474128,937,836 - 28,944,000 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021110539 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021110539   ⟸   XM_021254880


Additional Information

Database Acc Id Source(s)
NCBI Gene Birc7 ENTREZGENE