Rfesd (Rieske Fe-S domain containing) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rfesd (Rieske Fe-S domain containing) Heterocephalus glaber
Analyze
Symbol: Rfesd
Name: Rieske Fe-S domain containing
RGD ID: 18917438
Description: ENCODES a protein that exhibits 2 iron, 2 sulfur cluster binding (inferred); iron-sulfur cluster binding (inferred); metal ion binding (inferred); INVOLVED IN obsolete aromatic compound catabolic process (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Rieske domain-containing protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474314,296,683 - 14,309,507 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474314,295,923 - 14,322,805 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rfesd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474314,296,683 - 14,309,507 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474314,295,923 - 14,322,805 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RFESD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38595,646,777 - 95,658,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl595,646,777 - 95,684,773 (+)EnsemblGRCh38hg38GRCh38
GRCh37594,982,481 - 94,993,786 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36595,008,340 - 95,018,600 (+)NCBINCBI36Build 36hg18NCBI36
Celera590,860,909 - 90,871,275 (+)NCBICelera
Cytogenetic Map5q15NCBI
HuRef590,172,825 - 90,183,191 (+)NCBIHuRef
CHM1_1594,415,152 - 94,425,520 (+)NCBICHM1_1
T2T-CHM13v2.0596,147,700 - 96,159,005 (+)NCBIT2T-CHM13v2.0
Rfesd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391376,149,654 - 76,166,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1376,149,654 - 76,166,838 (-)EnsemblGRCm39 Ensembl
GRCm381376,001,535 - 76,018,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1376,001,535 - 76,018,719 (-)EnsemblGRCm38mm10GRCm38
MGSCv371376,138,983 - 76,156,160 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361376,467,537 - 76,484,564 (-)NCBIMGSCv36mm8
Celera1378,330,947 - 78,337,560 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.95NCBI
Rfesd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr827,220,389 - 7,254,394 (-)NCBIGRCr8
mRatBN7.225,495,067 - 5,521,095 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl25,505,756 - 5,522,449 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx212,613,039 - 12,622,713 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0210,712,268 - 10,721,942 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.025,348,621 - 5,358,302 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.022,758,382 - 2,784,366 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl22,769,400 - 2,779,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.022,756,829 - 2,782,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.423,054,514 - 3,064,195 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.123,073,913 - 3,083,625 (-)NCBI
Celera21,975,682 - 1,985,254 (-)NCBICelera
Cytogenetic Map2q11NCBI
Rfesd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541816,896,522 - 16,912,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541816,897,714 - 16,900,324 (-)NCBIChiLan1.0ChiLan1.0
RFESD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2419,722,030 - 19,732,451 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1517,873,819 - 17,886,063 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0519,692,054 - 19,702,479 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1519,836,388 - 19,847,697 (-)NCBIpanpan1.1PanPan1.1panPan2
RFESD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1313,948,582 - 13,961,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl313,949,145 - 13,951,503 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha315,287,714 - 15,300,380 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0313,828,716 - 13,841,719 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl313,829,287 - 13,831,644 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1313,791,524 - 13,804,372 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0313,789,361 - 13,801,979 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0313,988,766 - 14,001,420 (-)NCBIUU_Cfam_GSD_1.0
Rfesd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213169,493,816 - 169,506,043 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365237,678,444 - 7,691,453 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365237,679,232 - 7,691,447 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RFESD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2102,243,726 - 102,255,000 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12102,243,788 - 102,254,278 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2295,686,349 - 95,696,840 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RFESD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1489,524,162 - 89,576,505 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl489,531,494 - 89,533,764 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604938,169,595 - 38,180,862 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014207   ⟹   ENSHGLP00000014064
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474314,296,683 - 14,309,507 (+)Ensembl
RefSeq Acc Id: XM_004841697   ⟹   XP_004841754
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474314,296,541 - 14,308,852 (+)NCBI
RefSeq Acc Id: XM_004841698   ⟹   XP_004841755
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474314,296,541 - 14,308,852 (+)NCBI
RefSeq Acc Id: XM_021255785   ⟹   XP_021111444
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474314,295,923 - 14,308,852 (+)NCBI
RefSeq Acc Id: XM_021255786   ⟹   XP_021111445
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474314,295,923 - 14,322,805 (+)NCBI
RefSeq Acc Id: XR_002393812
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474314,295,923 - 14,322,805 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004841754 (Get FASTA)   NCBI Sequence Viewer  
  XP_004841755 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111444 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111445 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014064
Reference Protein Sequences
RefSeq Acc Id: XP_021111445   ⟸   XM_021255786
- Peptide Label: isoform X1
- UniProtKB: G5BU31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111444   ⟸   XM_021255785
- Peptide Label: isoform X1
- UniProtKB: G5BU31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004841754   ⟸   XM_004841697
- Peptide Label: isoform X2
- UniProtKB: G5BU31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004841755   ⟸   XM_004841698
- Peptide Label: isoform X2
- UniProtKB: G5BU31 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000014064   ⟸   ENSHGLT00000014207


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010044 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014207 ENTREZGENE
Gene3D-CATH Rieske [2Fe-2S] iron-sulphur domain UniProtKB/TrEMBL
InterPro Rieske_2Fe-2S UniProtKB/TrEMBL
  Rieske_2Fe-2S_sf UniProtKB/TrEMBL
NCBI Gene Rfesd ENTREZGENE
PANTHER FERREDOXIN-RELATED UniProtKB/TrEMBL
  RIESKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Rieske UniProtKB/TrEMBL
PROSITE RIESKE UniProtKB/TrEMBL
Superfamily-SCOP ISP domain UniProtKB/TrEMBL
UniProt G5BU31 ENTREZGENE, UniProtKB/TrEMBL