Slc35d3 (solute carrier family 35 member D3) - Rat Genome Database

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Gene: Slc35d3 (solute carrier family 35 member D3) Heterocephalus glaber
Analyze
Symbol: Slc35d3
Name: solute carrier family 35 member D3
RGD ID: 18917233
Description: ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN energy homeostasis (ortholog); platelet dense granule organization (ortholog); positive regulation of autophagy (ortholog); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); immunodeficiency 27A (ortholog); Nontuberculous Mycobacterium Infections (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624886867,631 - 870,247 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624886867,131 - 870,282 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Slc35d3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624886867,631 - 870,247 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624886867,131 - 870,282 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC35D3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386136,922,301 - 136,925,660 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6136,922,301 - 136,925,660 (+)EnsemblGRCh38hg38GRCh38
GRCh376137,243,439 - 137,246,798 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366137,285,095 - 137,288,470 (+)NCBINCBI36Build 36hg18NCBI36
Celera6137,983,854 - 137,987,229 (+)NCBICelera
Cytogenetic Map6q23.3NCBI
HuRef6134,808,122 - 134,811,497 (+)NCBIHuRef
CHM1_16137,506,035 - 137,509,410 (+)NCBICHM1_1
T2T-CHM13v2.06138,110,480 - 138,113,839 (+)NCBIT2T-CHM13v2.0
Slc35d3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391019,723,662 - 19,728,195 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1019,723,662 - 19,727,205 (-)EnsemblGRCm39 Ensembl
GRCm381019,847,917 - 19,856,634 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1019,847,916 - 19,851,459 (-)EnsemblGRCm38mm10GRCm38
MGSCv371019,567,723 - 19,571,265 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361019,537,333 - 19,540,875 (-)NCBIMGSCv36mm8
Celera1019,734,650 - 19,738,192 (-)NCBICelera
Cytogenetic Map10A3NCBI
cM Map109.12NCBI
Slc35d3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8116,389,308 - 16,392,780 (-)NCBIGRCr8
mRatBN7.2114,565,482 - 14,573,581 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl114,569,687 - 14,573,159 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx114,335,296 - 14,338,768 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0120,337,155 - 20,340,627 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0114,549,836 - 14,553,308 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0115,298,526 - 15,301,998 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,298,526 - 15,301,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0116,846,809 - 16,850,281 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4115,086,254 - 15,089,726 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1115,087,204 - 15,089,512 (-)NCBI
Celera113,011,985 - 13,015,457 (-)NCBICelera
Cytogenetic Map1p12NCBI
Slc35d3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543960,615 - 64,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543960,689 - 63,968 (-)NCBIChiLan1.0ChiLan1.0
SLC35D3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25156,889,218 - 156,892,966 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16154,788,330 - 154,791,733 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06134,683,339 - 134,686,731 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16138,771,529 - 138,774,860 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6138,771,529 - 138,774,860 (+)Ensemblpanpan1.1panPan2
SLC35D3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1129,426,003 - 29,429,272 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl129,425,559 - 29,428,270 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha130,308,618 - 30,312,294 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0129,587,167 - 29,590,852 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl129,587,177 - 29,590,388 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1129,472,073 - 29,475,736 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0129,357,253 - 29,360,919 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0129,656,307 - 29,659,976 (+)NCBIUU_Cfam_GSD_1.0
Slc35d3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946124,529,177 - 124,534,182 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365604,308,928 - 4,313,347 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365604,309,136 - 4,313,259 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35D3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,246,752 - 27,250,254 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,246,742 - 27,250,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2130,637,620 - 30,640,261 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35D3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11336,475,017 - 36,478,506 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1336,475,981 - 36,478,292 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660408,662,442 - 8,669,609 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000000215   ⟹   ENSHGLP00000000185
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624886867,631 - 870,247 (-)Ensembl
RefSeq Acc Id: XM_004871473   ⟹   XP_004871530
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624886867,131 - 870,282 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004871530 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15323 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000185
Reference Protein Sequences
RefSeq Acc Id: XP_004871530   ⟸   XM_004871473
- UniProtKB: G5C1B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000000185   ⟸   ENSHGLT00000000215


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000195 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000000215 ENTREZGENE
NCBI Gene Slc35d3 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35 MEMBER D3 UniProtKB/TrEMBL
UniProt G5C1B2 ENTREZGENE, UniProtKB/TrEMBL