SLC35D3 (solute carrier family 35 member D3) - Rat Genome Database

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Gene: SLC35D3 (solute carrier family 35 member D3) Sus scrofa
Analyze
Symbol: SLC35D3
Name: solute carrier family 35 member D3
RGD ID: 13992686
Description: ENCODES a protein that exhibits antiporter activity (inferred); protein-macromolecule adaptor activity (inferred); UDP-galactose transmembrane transporter activity (inferred); INVOLVED IN energy homeostasis (ortholog); positive regulation of protein exit from endoplasmic reticulum (ortholog); protein exit from endoplasmic reticulum (ortholog); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); immunodeficiency 27A (ortholog); Nontuberculous Mycobacterium Infections (ortholog); FOUND IN early endosome membrane (ortholog); synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,246,752 - 27,250,254 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,246,742 - 27,250,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2130,637,620 - 30,640,261 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC35D3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,246,752 - 27,250,254 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,246,742 - 27,250,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2130,637,620 - 30,640,261 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35D3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386136,922,301 - 136,925,660 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6136,922,301 - 136,925,660 (+)EnsemblGRCh38hg38GRCh38
GRCh376137,243,439 - 137,246,798 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366137,285,095 - 137,288,470 (+)NCBINCBI36Build 36hg18NCBI36
Celera6137,983,854 - 137,987,229 (+)NCBICelera
Cytogenetic Map6q23.3NCBI
HuRef6134,808,122 - 134,811,497 (+)NCBIHuRef
CHM1_16137,506,035 - 137,509,410 (+)NCBICHM1_1
T2T-CHM13v2.06138,110,480 - 138,113,839 (+)NCBIT2T-CHM13v2.0
Slc35d3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391019,723,662 - 19,728,195 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1019,723,662 - 19,727,205 (-)EnsemblGRCm39 Ensembl
GRCm381019,847,917 - 19,856,634 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1019,847,916 - 19,851,459 (-)EnsemblGRCm38mm10GRCm38
MGSCv371019,567,723 - 19,571,265 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361019,537,333 - 19,540,875 (-)NCBIMGSCv36mm8
Celera1019,734,650 - 19,738,192 (-)NCBICelera
Cytogenetic Map10A3NCBI
cM Map109.12NCBI
Slc35d3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8116,389,308 - 16,392,780 (-)NCBIGRCr8
mRatBN7.2114,565,482 - 14,573,581 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl114,569,687 - 14,573,159 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx114,335,296 - 14,338,768 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0120,337,155 - 20,340,627 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0114,549,836 - 14,553,308 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0115,298,526 - 15,301,998 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,298,526 - 15,301,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0116,846,809 - 16,850,281 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4115,086,254 - 15,089,726 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1115,087,204 - 15,089,512 (-)NCBI
Celera113,011,985 - 13,015,457 (-)NCBICelera
Cytogenetic Map1p12NCBI
Slc35d3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543960,615 - 64,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543960,689 - 63,968 (-)NCBIChiLan1.0ChiLan1.0
SLC35D3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25156,889,218 - 156,892,966 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16154,788,330 - 154,791,733 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06134,683,339 - 134,686,731 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16138,771,529 - 138,774,860 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6138,771,529 - 138,774,860 (+)Ensemblpanpan1.1panPan2
SLC35D3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1129,426,003 - 29,429,272 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl129,425,559 - 29,428,270 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha130,308,618 - 30,312,294 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0129,587,167 - 29,590,852 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl129,587,177 - 29,590,388 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1129,472,073 - 29,475,736 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0129,357,253 - 29,360,919 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0129,656,307 - 29,659,976 (+)NCBIUU_Cfam_GSD_1.0
Slc35d3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946124,529,177 - 124,534,182 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365604,308,928 - 4,313,347 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365604,309,136 - 4,313,259 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35D3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11336,475,017 - 36,478,506 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1336,475,981 - 36,478,292 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660408,662,442 - 8,669,609 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35d3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624886867,631 - 870,247 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624886867,131 - 870,282 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC35D3
81 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system
High
Medium
Low 7
Below cutoff 4 1 4

Sequence


RefSeq Acc Id: ENSSSCT00000004598   ⟹   ENSSSCP00000004495
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl127,246,752 - 27,250,254 (-)Ensembl
RefSeq Acc Id: XM_013992537   ⟹   XP_013847991
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1127,246,742 - 27,250,476 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013847991   ⟸   XM_013992537
- UniProtKB: A0A4X1VLS1 (UniProtKB/TrEMBL),   F1S688 (UniProtKB/TrEMBL),   A0A2I7Z9W3 (UniProtKB/TrEMBL),   A0A8D0PCS9 (UniProtKB/TrEMBL),   A0A8D1QSQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000004495   ⟸   ENSSSCT00000004598


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004159 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005025678 UniProtKB/TrEMBL
  ENSSSCG00015059443 UniProtKB/TrEMBL
  ENSSSCG00025069248 UniProtKB/TrEMBL
  ENSSSCG00030051646 UniProtKB/TrEMBL
  ENSSSCG00035054295 UniProtKB/TrEMBL
  ENSSSCG00040064132 UniProtKB/TrEMBL
  ENSSSCG00045004908 UniProtKB/TrEMBL
  ENSSSCG00050013315 UniProtKB/TrEMBL
  ENSSSCG00055014148 UniProtKB/TrEMBL
  ENSSSCG00060033579 UniProtKB/TrEMBL
  ENSSSCG00065033290 UniProtKB/TrEMBL
  ENSSSCG00070025098 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004598 ENTREZGENE
  ENSSSCT00000004598.2 UniProtKB/TrEMBL
  ENSSSCT00005040733.1 UniProtKB/TrEMBL
  ENSSSCT00015079369.1 UniProtKB/TrEMBL
  ENSSSCT00025095167.1 UniProtKB/TrEMBL
  ENSSSCT00030071951.1 UniProtKB/TrEMBL
  ENSSSCT00035072467.1 UniProtKB/TrEMBL
  ENSSSCT00040087568.1 UniProtKB/TrEMBL
  ENSSSCT00045008138.1 UniProtKB/TrEMBL
  ENSSSCT00050017973.1 UniProtKB/TrEMBL
  ENSSSCT00055027912.1 UniProtKB/TrEMBL
  ENSSSCT00060045537.1 UniProtKB/TrEMBL
  ENSSSCT00065045240.1 UniProtKB/TrEMBL
  ENSSSCT00070050171.1 UniProtKB/TrEMBL
NCBI Gene SLC35D3 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35 MEMBER D3 UniProtKB/TrEMBL
UniProt A0A2I7Z9W3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VLS1 ENTREZGENE
  A0A8D0PCS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QSQ2 ENTREZGENE, UniProtKB/TrEMBL
  F1S688 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VLS1 UniProtKB/TrEMBL
VGNC ID VGNC:93076 ENTREZGENE