Cmtm3 (CKLF like MARVEL transmembrane domain containing 3) - Rat Genome Database

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Gene: Cmtm3 (CKLF like MARVEL transmembrane domain containing 3) Heterocephalus glaber
Analyze
Symbol: Cmtm3
Name: CKLF like MARVEL transmembrane domain containing 3
RGD ID: 18915659
Description: INVOLVED IN blastocyst hatching (ortholog); positive regulation of B cell receptor signaling pathway (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cataract 5 multiple types (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CKLF-like MARVEL transmembrane domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,830,839 - 19,839,430 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474619,830,839 - 19,840,350 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cmtm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,830,839 - 19,839,430 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474619,830,839 - 19,840,350 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CMTM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381666,603,996 - 66,613,892 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1666,603,874 - 66,613,892 (+)EnsemblGRCh38hg38GRCh38
GRCh371666,637,899 - 66,647,795 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,195,703 - 65,205,296 (+)NCBINCBI36Build 36hg18NCBI36
Build 341665,195,713 - 65,205,294NCBI
Celera1651,144,695 - 51,154,288 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1652,513,869 - 52,523,565 (+)NCBIHuRef
CHM1_11668,045,115 - 68,054,938 (+)NCBICHM1_1
T2T-CHM13v2.01672,397,883 - 72,408,187 (+)NCBIT2T-CHM13v2.0
Cmtm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,065,993 - 105,074,304 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8105,066,042 - 105,074,304 (+)EnsemblGRCm39 Ensembl
GRCm388104,339,383 - 104,347,672 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8104,339,410 - 104,347,672 (+)EnsemblGRCm38mm10GRCm38
MGSCv378106,864,494 - 106,871,572 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368107,229,723 - 107,236,801 (+)NCBIMGSCv36mm8
Celera8108,574,852 - 108,578,767 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Cmtm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819629,000 - 637,152 (-)NCBIGRCr8
mRatBN7.219622,563 - 630,721 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19604,458 - 629,790 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx19618,378 - 625,233 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,385,179 - 1,392,034 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.019660,393 - 667,248 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.019830,874 - 838,528 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl19830,877 - 838,099 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.019829,210 - 836,752 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.419579,430 - 586,297 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.119579,428 - 586,653 (-)NCBI
Celera19618,503 - 625,370 (-)NCBICelera
Cytogenetic Map19p14NCBI
Cmtm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543323,178,061 - 23,185,666 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543323,178,062 - 23,185,666 (+)NCBIChiLan1.0ChiLan1.0
CMTM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,104,957 - 76,114,452 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,016,178 - 82,026,869 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01646,920,341 - 46,930,047 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11666,022,704 - 66,031,525 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,022,698 - 66,031,525 (+)Ensemblpanpan1.1panPan2
CMTM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,660,995 - 82,667,360 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,661,256 - 82,667,372 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha582,649,435 - 82,655,885 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0583,097,745 - 83,104,133 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1582,920,762 - 82,927,149 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0582,607,803 - 82,614,213 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0583,246,277 - 83,252,668 (-)NCBIUU_Cfam_GSD_1.0
Cmtm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934942,652,485 - 42,662,194 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647516,929,628 - 16,931,385 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647516,929,726 - 16,935,403 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMTM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,308,141 - 27,317,308 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,308,146 - 27,320,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CMTM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1552,302,606 - 52,312,277 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl552,303,288 - 52,311,165 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604723,602,277 - 23,611,446 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015823   ⟹   ENSHGLP00000015659
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474619,830,839 - 19,839,430 (-)Ensembl
RefSeq Acc Id: XM_004843104   ⟹   XP_004843161
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,830,839 - 19,839,839 (-)NCBI
RefSeq Acc Id: XM_021256938   ⟹   XP_021112597
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,831,932 - 19,840,048 (-)NCBI
RefSeq Acc Id: XM_021256939   ⟹   XP_021112598
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,831,932 - 19,840,350 (-)NCBI
RefSeq Acc Id: XM_021256940   ⟹   XP_021112599
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,831,932 - 19,840,350 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843161 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112597 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112598 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112599 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015659
Reference Protein Sequences
RefSeq Acc Id: XP_004843161   ⟸   XM_004843104
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021112599   ⟸   XM_021256940
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021112598   ⟸   XM_021256939
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021112597   ⟸   XM_021256938
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000015659   ⟸   ENSHGLT00000015823


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011197 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015823 ENTREZGENE
NCBI Gene Cmtm3 ENTREZGENE