Trit1 (tRNA isopentenyltransferase 1) - Rat Genome Database

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Gene: Trit1 (tRNA isopentenyltransferase 1) Heterocephalus glaber
Analyze
Symbol: Trit1
Name: tRNA isopentenyltransferase 1
RGD ID: 18915203
Description: ENCODES a protein that exhibits AMP dimethylallyltransferase activity (inferred); ATP binding (inferred); metal ion binding (inferred); INVOLVED IN mitochondrial tRNA modification (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); combined oxidative phosphorylation deficiency 35 (ortholog); Generalized Epilepsy (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tRNA dimethylallyltransferase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476422,323,732 - 22,370,298 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trit1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476422,323,732 - 22,370,298 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRIT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38139,838,110 - 39,883,511 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl139,838,110 - 39,883,511 (-)EnsemblGRCh38hg38GRCh38
GRCh37140,303,782 - 40,349,183 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,079,315 - 40,121,764 (-)NCBINCBI36Build 36hg18NCBI36
Build 34139,975,821 - 40,018,270NCBI
Celera138,588,146 - 38,630,620 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef138,425,294 - 38,467,814 (-)NCBIHuRef
CHM1_1140,422,408 - 40,464,830 (-)NCBICHM1_1
T2T-CHM13v2.0139,707,546 - 39,752,951 (-)NCBIT2T-CHM13v2.0
Trit1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394122,910,342 - 122,948,742 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4122,910,390 - 122,948,742 (+)EnsemblGRCm39 Ensembl
GRCm384123,016,544 - 123,054,949 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4123,016,597 - 123,054,949 (+)EnsemblGRCm38mm10GRCm38
MGSCv374122,693,840 - 122,732,177 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364122,518,900 - 122,557,237 (+)NCBIMGSCv36mm8
Celera4121,346,514 - 121,384,922 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.36NCBI
Trit1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85140,578,459 - 140,623,881 (+)NCBIGRCr8
mRatBN7.25135,293,472 - 135,341,522 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5135,295,330 - 135,338,764 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5138,002,003 - 138,045,445 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05139,771,983 - 139,815,418 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05139,779,104 - 139,822,539 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05140,711,943 - 140,756,893 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5140,712,583 - 140,756,085 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05144,502,459 - 144,547,373 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,330,963 - 142,374,390 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15142,336,188 - 142,379,610 (+)NCBI
Celera5133,833,435 - 133,876,861 (+)NCBICelera
Cytogenetic Map5q36NCBI
Trit1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545217,330,446 - 17,378,579 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545217,330,446 - 17,378,579 (-)NCBIChiLan1.0ChiLan1.0
TRIT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21186,938,853 - 186,982,063 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11186,076,509 - 186,119,695 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,130,198 - 39,173,238 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1140,456,427 - 40,499,187 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl140,456,432 - 40,499,187 (-)Ensemblpanpan1.1panPan2
TRIT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1153,013,928 - 3,071,029 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl153,013,666 - 3,071,034 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha153,270,430 - 3,328,161 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0153,100,834 - 3,158,792 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl153,101,249 - 3,158,788 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1153,007,689 - 3,065,419 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0153,067,609 - 3,128,094 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0153,084,025 - 3,141,812 (+)NCBIUU_Cfam_GSD_1.0
Trit1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505855,864,634 - 55,914,998 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647421,689,363 - 21,739,857 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647421,689,411 - 21,739,770 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,626,825 - 95,683,805 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,622,056 - 95,683,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2688,777,755 - 88,797,787 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12093,017,385 - 93,065,601 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2093,017,428 - 93,064,904 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603323,775,915 - 23,824,797 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021263400   ⟹   XP_021119059
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476422,323,732 - 22,370,298 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021119059 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014396
Reference Protein Sequences
RefSeq Acc Id: XP_021119059   ⟸   XM_021263400
- UniProtKB: G5C408 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010308 ENTREZGENE
Ensembl Transcript ENSHGLT00000014540 ENTREZGENE
Gene3D-CATH 1.10.20.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
  Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain UniProtKB/TrEMBL
  P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
InterPro Dimethylallyltransferase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Znf_C2H2_jaz UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene Trit1 ENTREZGENE
PANTHER TRNA DIMETHYLALLYLTRANSFERASE UniProtKB/TrEMBL
  TRNA DIMETHYLALLYLTRANSFERASE UniProtKB/TrEMBL
Pfam IPPT UniProtKB/TrEMBL
  zf-C2H2_jaz UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
  P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt G5C408 ENTREZGENE, UniProtKB/TrEMBL