Nop10 (NOP10 ribonucleoprotein) - Rat Genome Database

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Gene: Nop10 (NOP10 ribonucleoprotein) Heterocephalus glaber
Analyze
Symbol: Nop10
Name: NOP10 ribonucleoprotein
RGD ID: 18912950
Description: ENCODES a protein that exhibits box H/ACA snoRNA binding (inferred); RNA binding (inferred); snoRNA binding (inferred); INVOLVED IN snoRNA guided rRNA pseudouridine synthesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH agenesis of the corpus callosum with peripheral neuropathy (ortholog); Autosomal Recessive Dyskeratosis Congenita (ortholog); autosomal recessive dyskeratosis congenita 1 (ortholog); FOUND IN box H/ACA snoRNP complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: H/ACA ribonucleoprotein complex subunit 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248254,125,455 - 4,126,188 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248254,125,455 - 4,126,229 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nop10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248254,125,455 - 4,126,188 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248254,125,455 - 4,126,229 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NOP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381534,341,719 - 34,343,136 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1534,339,159 - 34,343,180 (-)EnsemblGRCh38hg38GRCh38
GRCh371534,633,920 - 34,635,337 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361532,421,209 - 32,422,654 (-)NCBINCBI36Build 36hg18NCBI36
Build 341532,421,210 - 32,422,653NCBI
Celera1511,436,557 - 11,438,002 (-)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1511,497,261 - 11,498,790 (-)NCBIHuRef
CHM1_11534,751,973 - 34,753,418 (-)NCBICHM1_1
T2T-CHM13v2.01532,140,024 - 32,141,441 (-)NCBIT2T-CHM13v2.0
Nop10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392112,092,271 - 112,093,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2112,092,271 - 112,093,614 (+)EnsemblGRCm39 Ensembl
GRCm382112,261,926 - 112,262,898 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2112,261,926 - 112,263,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv372112,102,126 - 112,103,055 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362112,062,808 - 112,063,739 (+)NCBIMGSCv36mm8
Celera2113,419,363 - 113,420,294 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.99NCBI
Nop10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83119,521,255 - 119,522,340 (+)NCBIGRCr8
mRatBN7.2399,066,857 - 99,067,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl399,066,857 - 99,067,942 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3102,694,691 - 102,695,776 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03111,293,687 - 111,294,772 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03108,989,313 - 108,990,398 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03103,747,654 - 103,748,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3103,747,654 - 103,748,739 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03110,342,516 - 110,343,601 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4398,104,993 - 98,106,078 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera398,052,656 - 98,053,741 (+)NCBICelera
Cytogenetic Map3q35NCBI
Nop10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955416272,127 - 273,068 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955416272,127 - 273,068 (+)NCBIChiLan1.0ChiLan1.0
NOP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21623,123,741 - 23,125,224 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11527,845,533 - 27,847,012 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01512,850,708 - 12,852,171 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11531,684,833 - 31,686,305 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1531,684,833 - 31,686,305 (-)Ensemblpanpan1.1panPan2
NOP10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.130766,801 - 767,615 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl30766,853 - 767,613 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha30811,007 - 811,816 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.030862,842 - 863,651 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.130811,235 - 812,044 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.030910,189 - 910,997 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0301,037,812 - 1,038,620 (+)NCBIUU_Cfam_GSD_1.0
Nop10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864079,321,396 - 79,322,234 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366732,829,599 - 2,830,407 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOP10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl780,161,096 - 80,164,328 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1780,161,024 - 80,162,299 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2786,158,373 - 86,159,186 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12648,563,535 - 48,566,409 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2648,563,517 - 48,566,745 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604892,335,994 - 92,342,757 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008346   ⟹   ENSHGLP00000008257
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248254,125,455 - 4,126,188 (-)Ensembl
RefSeq Acc Id: XM_004864986   ⟹   XP_004865043
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248254,125,455 - 4,126,229 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004865043 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15661 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008257
  ENSHGLP00100007886
GenBank Protein JAN97945 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004865043   ⟸   XM_004864986
- UniProtKB: G5C2A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000008257   ⟸   ENSHGLT00000008346


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005973 Ensembl, ENTREZGENE
  ENSHGLG00100005877 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008346 ENTREZGENE
  ENSHGLT00100007984 UniProtKB/TrEMBL
Gene3D-CATH H/ACA ribonucleoprotein complex, subunit Nop10 UniProtKB/TrEMBL
InterPro H/ACA_rnp_Nop10 UniProtKB/TrEMBL
  H/ACA_rnp_Nop10_sf UniProtKB/TrEMBL
KEGG Report hgl:101703459 UniProtKB/TrEMBL
NCBI Gene Nop10 ENTREZGENE
PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3 UniProtKB/TrEMBL
  PTHR13305 UniProtKB/TrEMBL
Pfam Nop10p UniProtKB/TrEMBL
Superfamily-SCOP SSF144210 UniProtKB/TrEMBL
UniProt G5C2A0 ENTREZGENE, UniProtKB/TrEMBL