Ino80c (INO80 complex subunit C) - Rat Genome Database

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Pathways
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Gene: Ino80c (INO80 complex subunit C) Heterocephalus glaber
Analyze
Symbol: Ino80c
Name: INO80 complex subunit C
RGD ID: 18910402
Description: INVOLVED IN positive regulation of DNA repair (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of telomere maintenance in response to DNA damage (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH intellectual disability (ortholog); FOUND IN Ino80 complex (ortholog); MLL1 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,843,065 - 9,862,137 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,843,068 - 9,861,959 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Ino80 complex  (IEA,ISO)
MLL1 complex  (ISO)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ino80c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,843,065 - 9,862,137 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,843,068 - 9,861,959 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
INO80C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,468,333 - 35,497,960 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,452,230 - 35,497,979 (-)EnsemblGRCh38hg38GRCh38
GRCh371833,048,297 - 33,077,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,302,289 - 31,331,953 (-)NCBINCBI36Build 36hg18NCBI36
Build 341831,302,295 - 31,331,953NCBI
Celera1829,856,143 - 29,885,819 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1829,908,353 - 29,937,720 (-)NCBIHuRef
CHM1_11832,975,385 - 33,005,073 (-)NCBICHM1_1
T2T-CHM13v2.01835,659,720 - 35,689,378 (-)NCBIT2T-CHM13v2.0
Ino80c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,237,818 - 24,254,876 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,237,814 - 24,255,010 (-)EnsemblGRCm39 Ensembl
GRCm381824,104,761 - 24,121,819 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,104,757 - 24,121,953 (-)EnsemblGRCm38mm10GRCm38
MGSCv371824,263,262 - 24,280,320 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,247,771 - 24,264,829 (-)NCBIMGSCv36mm8
Celera1824,594,754 - 24,611,292 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.74NCBI
Ino80c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,653,508 - 15,752,455 (-)NCBIGRCr8
mRatBN7.21815,378,764 - 15,398,574 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,378,770 - 15,393,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1815,565,979 - 15,580,823 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,348,684 - 16,363,528 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,638,515 - 15,653,207 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,995,005 - 16,009,639 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,995,000 - 16,009,710 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,757,172 - 15,771,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41815,863,573 - 15,878,207 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11815,890,219 - 15,904,853 (-)NCBI
Celera1815,326,724 - 15,341,400 (-)NCBICelera
Cytogenetic Map18p12NCBI
Ino80c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,189,943 - 22,210,658 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,189,943 - 22,210,315 (-)NCBIChiLan1.0ChiLan1.0
INO80C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,856,561 - 52,886,393 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,549,152 - 38,578,976 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,686,112 - 28,715,946 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,274,331 - 32,319,177 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,260,924 - 32,304,152 (-)Ensemblpanpan1.1panPan2
INO80C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,569,954 - 54,586,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,569,972 - 54,586,782 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha753,994,976 - 54,012,142 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0754,540,829 - 54,558,010 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,540,845 - 54,557,893 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1754,223,695 - 54,240,872 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0754,246,861 - 54,264,015 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,540,279 - 54,557,460 (+)NCBIUU_Cfam_GSD_1.0
Ino80c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,305,491 - 50,322,123 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,632,870 - 9,649,527 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,632,870 - 9,649,525 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INO80C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,262,227 - 119,285,779 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,262,488 - 119,285,852 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,721,259 - 111,744,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INO80C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,282,846 - 45,311,885 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,282,812 - 45,311,870 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,780,493 - 19,809,933 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005135   ⟹   ENSHGLP00000005069
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247799,843,065 - 9,862,137 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000005136   ⟹   ENSHGLP00000005070
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247799,843,065 - 9,861,590 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000005137   ⟹   ENSHGLP00000005071
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247799,843,310 - 9,861,774 (-)Ensembl
RefSeq Acc Id: XM_004855217   ⟹   XP_004855274
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,843,068 - 9,861,951 (-)NCBI
RefSeq Acc Id: XM_013076017   ⟹   XP_012931471
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,843,068 - 9,861,959 (-)NCBI
RefSeq Acc Id: XM_013076018   ⟹   XP_012931472
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,843,068 - 9,861,540 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004855274 (Get FASTA)   NCBI Sequence Viewer  
  XP_012931471 (Get FASTA)   NCBI Sequence Viewer  
  XP_012931472 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005069
  ENSHGLP00000005070
  ENSHGLP00100045188
GenBank Protein JAO01767 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012931471   ⟸   XM_013076017
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004855274   ⟸   XM_004855217
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K6X5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931472   ⟸   XM_013076018
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000005070   ⟸   ENSHGLT00000005136
RefSeq Acc Id: ENSHGLP00000005069   ⟸   ENSHGLT00000005135
RefSeq Acc Id: ENSHGLP00000005071   ⟸   ENSHGLT00000005137


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003718 Ensembl, ENTREZGENE
  ENSHGLG00100035470 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005135 ENTREZGENE
  ENSHGLT00000005136 ENTREZGENE
  ENSHGLT00100067375 UniProtKB/TrEMBL
InterPro INO80C/Ies6 UniProtKB/TrEMBL
  Vps72/YL1_C UniProtKB/TrEMBL
KEGG Report hgl:101709188 UniProtKB/TrEMBL
NCBI Gene Ino80c ENTREZGENE
PANTHER INO80 COMPLEX SUBUNIT C UniProtKB/TrEMBL
  PTHR31200 UniProtKB/TrEMBL
Pfam YL1_C UniProtKB/TrEMBL
SMART YL1_C UniProtKB/TrEMBL
UniProt A0A0P6K6X5 ENTREZGENE, UniProtKB/TrEMBL