Ssr4 (signal sequence receptor subunit 4) - Rat Genome Database

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Gene: Ssr4 (signal sequence receptor subunit 4) Heterocephalus glaber
Analyze
Symbol: Ssr4
Name: signal sequence receptor subunit 4
RGD ID: 18910229
Description: ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Barth syndrome (ortholog); FOUND IN Sec61 translocon complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: translocon-associated protein subunit delta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946472,339 - 475,989 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946472,364 - 475,989 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ssr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946472,339 - 475,989 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946472,364 - 475,989 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SSR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,794,159 - 153,798,512 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,793,516 - 153,798,499 (+)EnsemblGRCh38hg38GRCh38
GRCh37X153,059,614 - 153,063,967 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,713,288 - 152,717,148 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X152,580,940 - 152,584,800NCBI
CeleraX153,293,775 - 153,297,635 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,716,658 - 141,720,995 (+)NCBIHuRef
CHM1_1X152,934,039 - 152,938,376 (+)NCBICHM1_1
T2T-CHM13v2.0X152,067,822 - 152,072,175 (+)NCBIT2T-CHM13v2.0
Ssr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,830,778 - 72,834,432 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,830,634 - 72,834,436 (+)EnsemblGRCm39 Ensembl
GRCm38X73,787,023 - 73,790,828 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,787,028 - 73,790,830 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,032,367 - 71,036,167 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,039,782 - 70,043,542 (+)NCBIMGSCv36mm8
CeleraX65,039,301 - 65,043,101 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.41NCBI
Ssr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,675,658 - 156,679,545 (+)NCBIGRCr8
mRatBN7.2X151,524,191 - 151,528,218 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,524,009 - 151,528,202 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,665,496 - 153,669,368 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,228,726 - 157,232,598 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,900,550 - 154,904,422 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,995,763 - 156,999,702 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,995,779 - 156,999,650 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,743,829 - 152,747,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,710,430 - 159,714,302 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X159,785,864 - 159,789,736 (+)NCBI
Celera1136,361,467 - 136,365,339 (-)NCBICelera
Cytogenetic MapXq37NCBI
Ssr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580507,672 - 511,498 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580507,672 - 511,498 (+)NCBIChiLan1.0ChiLan1.0
SSR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,835,008 - 153,839,247 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,838,724 - 153,842,858 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,344,286 - 143,349,272 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,230,137 - 153,235,124 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,230,137 - 153,235,124 (+)Ensemblpanpan1.1panPan2
SSR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,608,802 - 121,613,796 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,608,944 - 121,613,795 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,938,106 - 106,942,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,750,416 - 124,755,158 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,750,416 - 124,755,158 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,519,688 - 120,524,430 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,034,686 - 123,039,427 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,796,880 - 122,801,622 (+)NCBIUU_Cfam_GSD_1.0
Ssr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,937,689 - 118,941,483 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809675,049 - 679,707 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809675,178 - 679,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,537,540 - 124,541,637 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,537,545 - 124,541,635 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,102,139 - 142,106,233 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SSR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,221,671 - 128,225,628 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX128,221,443 - 128,225,873 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606566,089,006 - 66,092,962 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002314   ⟹   ENSHGLP00000002265
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624946472,339 - 475,989 (+)Ensembl
RefSeq Acc Id: XM_013069340   ⟹   XP_012924794
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946472,364 - 475,989 (+)NCBI
RefSeq Acc Id: XM_013069341   ⟹   XP_012924795
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946472,375 - 475,989 (+)NCBI
RefSeq Acc Id: XM_013069342   ⟹   XP_012924796
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946472,416 - 475,989 (+)NCBI
RefSeq Acc Id: XM_021252303   ⟹   XP_021107962
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946472,415 - 475,989 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012924794 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924795 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924796 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107962 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002265
Reference Protein Sequences
RefSeq Acc Id: XP_012924794   ⟸   XM_013069340
- Peptide Label: isoform X3
- UniProtKB: G5BQU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924795   ⟸   XM_013069341
- Peptide Label: isoform X4
- UniProtKB: G5BQU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107962   ⟸   XM_021252303
- Peptide Label: isoform X1
- UniProtKB: G5BQU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924796   ⟸   XM_013069342
- Peptide Label: isoform X2
- UniProtKB: G5BQU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002265   ⟸   ENSHGLT00000002314


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001720 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002314 ENTREZGENE
InterPro TRAP-delta UniProtKB/TrEMBL
NCBI Gene Ssr4 ENTREZGENE
PANTHER TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT DELTA UniProtKB/TrEMBL
  TRANSLOCON-ASSOCIATED PROTEIN, DELTA SUBUNIT UniProtKB/TrEMBL
Pfam TRAP-delta UniProtKB/TrEMBL
UniProt G5BQU0 ENTREZGENE, UniProtKB/TrEMBL