SSR4 (signal sequence receptor subunit 4) - Rat Genome Database

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Gene: SSR4 (signal sequence receptor subunit 4) Canis lupus familiaris
Analyze
Symbol: SSR4
Name: signal sequence receptor subunit 4
RGD ID: 12418241
Description: ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Barth syndrome (ortholog); FOUND IN Sec61 translocon complex (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: signal sequence receptor, delta (translocon-associated protein delta); translocon-associated protein subunit delta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,608,802 - 121,613,796 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,608,944 - 121,613,795 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,938,106 - 106,942,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,750,416 - 124,755,158 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,750,416 - 124,755,158 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,519,688 - 120,524,430 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,034,686 - 123,039,427 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,796,880 - 122,801,622 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:7916687   PMID:22301074   PMID:30032202   PMID:37756605  


Genomics

Comparative Map Data
SSR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,608,802 - 121,613,796 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,608,944 - 121,613,795 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,938,106 - 106,942,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,750,416 - 124,755,158 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,750,416 - 124,755,158 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,519,688 - 120,524,430 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,034,686 - 123,039,427 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,796,880 - 122,801,622 (+)NCBIUU_Cfam_GSD_1.0
SSR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,794,159 - 153,798,512 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,793,516 - 153,798,499 (+)EnsemblGRCh38hg38GRCh38
GRCh37X153,059,614 - 153,063,967 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,713,288 - 152,717,148 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X152,580,940 - 152,584,800NCBI
CeleraX153,293,775 - 153,297,635 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,716,658 - 141,720,995 (+)NCBIHuRef
CHM1_1X152,934,039 - 152,938,376 (+)NCBICHM1_1
T2T-CHM13v2.0X152,067,822 - 152,072,175 (+)NCBIT2T-CHM13v2.0
Ssr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,830,778 - 72,834,432 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,830,634 - 72,834,436 (+)EnsemblGRCm39 Ensembl
GRCm38X73,787,023 - 73,790,828 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,787,028 - 73,790,830 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,032,367 - 71,036,167 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,039,782 - 70,043,542 (+)NCBIMGSCv36mm8
CeleraX65,039,301 - 65,043,101 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.41NCBI
Ssr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,675,658 - 156,679,545 (+)NCBIGRCr8
mRatBN7.2X151,524,191 - 151,528,218 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,524,009 - 151,528,202 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,665,496 - 153,669,368 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,228,726 - 157,232,598 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,900,550 - 154,904,422 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,995,763 - 156,999,702 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,995,779 - 156,999,650 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,743,829 - 152,747,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,710,430 - 159,714,302 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X159,785,864 - 159,789,736 (+)NCBI
Celera1136,361,467 - 136,365,339 (-)NCBICelera
Cytogenetic MapXq37NCBI
Ssr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580507,672 - 511,498 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580507,672 - 511,498 (+)NCBIChiLan1.0ChiLan1.0
SSR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,835,008 - 153,839,247 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,838,724 - 153,842,858 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,344,286 - 143,349,272 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,230,137 - 153,235,124 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,230,137 - 153,235,124 (+)Ensemblpanpan1.1panPan2
Ssr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,937,689 - 118,941,483 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809675,049 - 679,707 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809675,178 - 679,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,537,540 - 124,541,637 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,537,545 - 124,541,635 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,102,139 - 142,106,233 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SSR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,221,671 - 128,225,628 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX128,221,443 - 128,225,873 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606566,089,006 - 66,092,962 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ssr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946472,339 - 475,989 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946472,364 - 475,989 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SSR4
44 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000030625   ⟹   ENSCAFP00000028462
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX121,608,944 - 121,613,795 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000063459   ⟹   ENSCAFP00000044143
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX121,608,944 - 121,613,795 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000066081   ⟹   ENSCAFP00000049131
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX121,608,944 - 121,613,795 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845044794   ⟹   ENSCAFP00845035104
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX124,750,416 - 124,755,158 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845044843   ⟹   ENSCAFP00845035143
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX124,750,416 - 124,755,158 (+)Ensembl
RefSeq Acc Id: NM_001204756   ⟹   NP_001191685
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X121,608,944 - 121,613,795 (+)NCBI
Dog10K_Boxer_TashaX106,938,106 - 106,942,847 (+)NCBI
ROS_Cfam_1.0X124,750,416 - 124,755,158 (+)NCBI
UMICH_Zoey_3.1X120,519,688 - 120,524,430 (+)NCBI
UNSW_CanFamBas_1.0X123,034,686 - 123,039,427 (+)NCBI
UU_Cfam_GSD_1.0X122,796,880 - 122,801,622 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001191685   ⟸   NM_001204756
- Peptide Label: precursor
- UniProtKB: A0A8C0LFW6 (UniProtKB/TrEMBL),   A0A8C0NNM2 (UniProtKB/TrEMBL),   A0A8I3PXW2 (UniProtKB/TrEMBL),   A0A8C0NQS7 (UniProtKB/TrEMBL),   A0A8I3PQN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000028462   ⟸   ENSCAFT00000030625
RefSeq Acc Id: ENSCAFP00000044143   ⟸   ENSCAFT00000063459
RefSeq Acc Id: ENSCAFP00000049131   ⟸   ENSCAFT00000066081
RefSeq Acc Id: ENSCAFP00845035104   ⟸   ENSCAFT00845044794
RefSeq Acc Id: ENSCAFP00845035143   ⟸   ENSCAFT00845044843


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019288 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030018606 UniProtKB/TrEMBL
  ENSCAFG00040019025 UniProtKB/TrEMBL
  ENSCAFG00845025375 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030625.5 UniProtKB/TrEMBL
  ENSCAFT00000066081.2 UniProtKB/TrEMBL
  ENSCAFT00030034289.1 UniProtKB/TrEMBL
  ENSCAFT00030034316.1 UniProtKB/TrEMBL
  ENSCAFT00040035236.1 UniProtKB/TrEMBL
  ENSCAFT00040035263.1 UniProtKB/TrEMBL
  ENSCAFT00845044794 ENTREZGENE
  ENSCAFT00845044794.1 UniProtKB/TrEMBL
  ENSCAFT00845044843.1 UniProtKB/TrEMBL
InterPro TRAP-delta UniProtKB/TrEMBL
KEGG Report cfa:481082 UniProtKB/TrEMBL
NCBI Gene SSR4 ENTREZGENE
PANTHER PTHR12731 UniProtKB/TrEMBL
  TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT DELTA UniProtKB/TrEMBL
Pfam TRAP-delta UniProtKB/TrEMBL
UniProt A0A8C0LFW6 ENTREZGENE
  A0A8C0NNM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NQS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PQN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PXW2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46840 ENTREZGENE