CUNH5orf58 (chromosome unknown C5orf58 homolog) - Rat Genome Database

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Gene: CUNH5orf58 (chromosome unknown C5orf58 homolog) Heterocephalus glaber
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Symbol: CUNH5orf58
Name: chromosome unknown C5orf58 homolog
RGD ID: 18909866
Description: ASSOCIATED WITH genetic disease (ortholog); immunodeficiency 40 (ortholog); Immunodeficiency 81 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative uncharacterized protein C5orf58 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473319,721,377 - 19,728,144 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CUNH5orf58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473319,721,377 - 19,728,144 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C5orf58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385170,232,985 - 170,252,570 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5170,229,104 - 170,252,575 (+)EnsemblGRCh38hg38GRCh38
GRCh375169,659,989 - 169,679,574 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365169,592,528 - 169,605,813 (+)NCBINCBI36Build 36hg18NCBI36
Celera5165,691,873 - 165,705,161 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5164,758,426 - 164,771,711 (+)NCBIHuRef
CHM1_15169,092,406 - 169,105,691 (+)NCBICHM1_1
T2T-CHM13v2.05170,771,839 - 170,791,430 (+)NCBIT2T-CHM13v2.0
4930469K13Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,923,961 - 34,048,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,923,961 - 34,048,554 (-)EnsemblGRCm39 Ensembl
GRCm381133,973,961 - 34,098,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,973,961 - 34,098,554 (-)EnsemblGRCm38mm10GRCm38
Celera1136,476,885 - 36,511,757 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.33NCBI
C10h5orf58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81019,195,306 - 19,203,013 (-)NCBIGRCr8
mRatBN7.21018,690,958 - 18,697,224 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1018,688,847 - 18,697,220 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01019,043,374 - 19,052,918 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1018,322,412 - 18,331,962 (-)NCBICelera
Cytogenetic Map10q12NCBI
LOC102016025
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540823,186,712 - 23,197,682 (+)NCBIChiLan1.0ChiLan1.0
C4H5orf58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24165,390,079 - 165,403,420 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15163,529,622 - 163,540,760 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05165,592,644 - 165,605,937 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15172,356,037 - 172,363,327 (+)NCBIpanpan1.1PanPan1.1panPan2
C4H5orf58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1441,656,638 - 41,665,051 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha441,608,640 - 41,617,091 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0442,032,461 - 42,040,931 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1441,849,694 - 41,858,143 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0442,036,532 - 42,045,007 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0442,547,230 - 42,555,686 (-)NCBIUU_Cfam_GSD_1.0
CUNH5orf58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721395,844,194 - 95,854,984 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366094,570,785 - 4,572,903 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C16H5orf58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11653,740,219 - 53,747,279 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21658,084,258 - 58,097,742 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH5orf58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12372,444,166 - 72,448,027 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660346,214,154 - 6,222,652 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004836396   ⟹   XP_004836453
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473319,721,377 - 19,728,124 (-)NCBI
RefSeq Acc Id: XM_021243085   ⟹   XP_021098744
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473319,721,377 - 19,728,144 (-)NCBI
RefSeq Acc Id: XM_021243087   ⟹   XP_021098746
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473319,721,377 - 19,728,133 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004836453 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098744 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098746 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021098744   ⟸   XM_021243085
- UniProtKB: G5B468 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098746   ⟸   XM_021243087
- UniProtKB: G5B468 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836453   ⟸   XM_004836396
- UniProtKB: G5B468 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
NCBI Gene CUNH5orf58 ENTREZGENE
UniProt G5B468 ENTREZGENE, UniProtKB/TrEMBL