Klhl17 (kelch like family member 17) - Rat Genome Database

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Gene: Klhl17 (kelch like family member 17) Heterocephalus glaber
Analyze
Symbol: Klhl17
Name: kelch like family member 17
RGD ID: 18906624
Description: ENCODES a protein that exhibits actin filament binding (ortholog); molecular adaptor activity (ortholog); POZ domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); regulation protein catabolic process at postsynapse (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); immunodeficiency 16 (ortholog); FOUND IN actin cytoskeleton (ortholog); dendrite cytoplasm (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kelch-like protein 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,546,137 - 8,550,603 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,545,562 - 8,551,348 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Klhl17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,546,137 - 8,550,603 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,545,562 - 8,551,348 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KLHL17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381960,584 - 965,719 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1960,584 - 965,719 (+)EnsemblGRCh38hg38GRCh38
GRCh371895,964 - 901,099 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361885,830 - 890,958 (+)NCBINCBI36Build 36hg18NCBI36
Build 341936,109 - 941,162NCBI
Celera11,690,578 - 1,695,031 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1166,390 - 170,737 (+)NCBIHuRef
CHM1_11883,012 - 888,029 (+)NCBICHM1_1
T2T-CHM13v2.01389,374 - 394,430 (+)NCBIT2T-CHM13v2.0
Klhl17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,313,501 - 156,319,314 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,313,792 - 156,319,314 (-)EnsemblGRCm39 Ensembl
GRCm384156,229,044 - 156,234,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,221,456 - 156,234,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv374155,603,153 - 155,608,966 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364155,603,466 - 155,608,945 (-)NCBIMGSCv36mm8
Celera4158,485,528 - 158,491,396 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map488.63NCBI
Klhl17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85172,095,701 - 172,101,945 (-)NCBIGRCr8
mRatBN7.25166,813,482 - 166,819,949 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,814,110 - 166,818,925 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,515,574 - 169,521,068 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,336,958 - 171,342,452 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,299,519 - 171,305,012 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,654,238 - 173,659,706 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,654,860 - 173,659,675 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05177,128,278 - 177,134,602 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45173,064,739 - 173,069,548 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15173,075,233 - 173,080,043 (-)NCBI
Celera5165,015,955 - 165,020,764 (-)NCBICelera
Cytogenetic Map5q36NCBI
Klhl17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,745,162 - 9,750,874 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,745,162 - 9,750,874 (-)NCBIChiLan1.0ChiLan1.0
KLHL17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,297,335 - 227,303,339 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,994,101 - 226,000,446 (-)NCBINHGRI_mPanPan1
PanPan1.11859,736 - 864,476 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1859,730 - 864,476 (+)Ensemblpanpan1.1panPan2
KLHL17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,186,077 - 56,193,671 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,187,922 - 56,192,983 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,264,141 - 56,271,730 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,389,363 - 56,397,191 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,389,214 - 56,396,503 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,380,471 - 56,388,286 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,272,408 - 56,280,204 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,662,426 - 56,670,222 (+)NCBIUU_Cfam_GSD_1.0
Klhl17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,379,695 - 27,385,239 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367372,079,582 - 2,086,152 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367372,080,699 - 2,086,252 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHL17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,322,184 - 63,328,259 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,320,898 - 63,328,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,898,263 - 57,901,884 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KLHL17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,467,286 - 130,472,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,467,261 - 130,471,904 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,097,403 - 35,102,481 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000009058   ⟹   ENSHGLP00000008963
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248188,546,137 - 8,550,603 (-)Ensembl
RefSeq Acc Id: XM_004863901   ⟹   XP_004863958
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248188,545,562 - 8,550,491 (-)NCBI
RefSeq Acc Id: XM_013065215   ⟹   XP_012920669
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248188,545,562 - 8,551,348 (-)NCBI
RefSeq Acc Id: XM_021243579   ⟹   XP_021099238
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248188,545,562 - 8,550,492 (-)NCBI
RefSeq Acc Id: XM_021243580   ⟹   XP_021099239
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248188,545,562 - 8,550,490 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004863958 (Get FASTA)   NCBI Sequence Viewer  
  XP_012920669 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099238 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099239 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008963
Reference Protein Sequences
RefSeq Acc Id: XP_012920669   ⟸   XM_013065215
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021099238   ⟸   XM_021243579
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004863958   ⟸   XM_004863901
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021099239   ⟸   XM_021243580
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000008963   ⟸   ENSHGLT00000009058


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006441 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009058 ENTREZGENE
NCBI Gene Klhl17 ENTREZGENE