Ktn1 (kinectin 1) - Rat Genome Database

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Gene: Ktn1 (kinectin 1) Heterocephalus glaber
Analyze
Symbol: Ktn1
Name: kinectin 1
RGD ID: 18903392
Description: ENCODES a protein that exhibits kinesin binding (inferred); INVOLVED IN microtubule-based movement (inferred); protein transport (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kinectin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624884409,339 - 483,562 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624884365,312 - 484,007 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ktn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624884409,339 - 483,562 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624884365,312 - 484,007 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381455,580,207 - 55,684,584 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1455,559,072 - 55,701,526 (+)EnsemblGRCh38hg38GRCh38
GRCh371456,046,925 - 56,151,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361455,116,678 - 55,221,055 (+)NCBINCBI36Build 36hg18NCBI36
Build 341455,116,792 - 55,221,047NCBI
Celera1436,096,260 - 36,200,637 (+)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1436,231,668 - 36,314,068 (+)NCBIHuRef
CHM1_11455,985,265 - 56,089,654 (+)NCBICHM1_1
T2T-CHM13v2.01449,785,926 - 49,890,300 (+)NCBIT2T-CHM13v2.0
Ktn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391447,886,551 - 47,974,021 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1447,885,905 - 47,977,351 (+)EnsemblGRCm39 Ensembl
GRCm381447,648,274 - 47,736,564 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1447,648,448 - 47,739,894 (+)EnsemblGRCm38mm10GRCm38
MGSCv371448,283,431 - 48,356,239 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361446,585,656 - 46,658,434 (+)NCBIMGSCv36mm8
Celera1443,864,096 - 43,936,861 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1424.6NCBI
Ktn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81523,392,570 - 23,485,061 (+)NCBIGRCr8
mRatBN7.21520,913,665 - 21,002,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1520,914,642 - 21,002,578 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01524,465,761 - 24,552,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1524,479,761 - 24,553,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01528,400,126 - 28,489,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41523,633,479 - 23,722,293 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11523,662,379 - 23,701,610 (+)NCBI
Celera1521,306,945 - 21,390,146 (+)NCBICelera
Cytogenetic Map15p14NCBI
Ktn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546613,664,763 - 13,747,337 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546613,664,312 - 13,747,368 (-)NCBIChiLan1.0ChiLan1.0
KTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21556,696,902 - 56,801,597 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11455,913,416 - 56,018,111 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01436,162,612 - 36,266,941 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11454,456,984 - 54,539,472 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1454,467,238 - 54,539,472 (+)Ensemblpanpan1.1panPan2
KTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1831,352,623 - 31,457,715 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl831,352,465 - 31,457,536 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha831,118,763 - 31,223,807 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0831,609,120 - 31,717,285 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl831,608,868 - 31,717,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1831,213,759 - 31,318,168 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0831,291,255 - 31,395,935 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0831,656,354 - 31,761,647 (+)NCBIUU_Cfam_GSD_1.0
Ktn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864073,743,757 - 73,817,618 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936495374,051 - 442,142 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1184,881,550 - 185,152,975 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11184,881,555 - 184,990,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21205,433,058 - 205,541,074 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12432,769,740 - 32,871,650 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2432,797,736 - 32,872,219 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013067922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01098839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH166744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000000986   ⟹   ENSHGLP00000000945
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624884409,339 - 483,562 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000000987   ⟹   ENSHGLP00000000946
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624884409,339 - 481,010 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000000988   ⟹   ENSHGLP00000000947
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624884409,339 - 481,010 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000000989   ⟹   ENSHGLP00000000948
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624884409,339 - 481,010 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000000990   ⟹   ENSHGLP00000000949
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624884409,339 - 481,010 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000000991   ⟹   ENSHGLP00000000950
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624884409,339 - 481,010 (+)Ensembl
RefSeq Acc Id: XM_013067922   ⟹   XP_012923376
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884365,312 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249236   ⟹   XP_021104895
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884400,973 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249237   ⟹   XP_021104896
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884389,771 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249238   ⟹   XP_021104897
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884409,308 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249239   ⟹   XP_021104898
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884409,308 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249240   ⟹   XP_021104899
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884409,339 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249241   ⟹   XP_021104900
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884409,308 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249243   ⟹   XP_021104902
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884409,339 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249244   ⟹   XP_021104903
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884409,339 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249245   ⟹   XP_021104904
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884409,339 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249246   ⟹   XP_021104905
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884409,308 - 484,007 (+)NCBI
RefSeq Acc Id: XM_021249247   ⟹   XP_021104906
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624884409,308 - 484,007 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012923376   ⟸   XM_013067922
- Peptide Label: isoform X1
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104896   ⟸   XM_021249237
- Peptide Label: isoform X1
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104895   ⟸   XM_021249236
- Peptide Label: isoform X1
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104900   ⟸   XM_021249241
- Peptide Label: isoform X5
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104898   ⟸   XM_021249239
- Peptide Label: isoform X3
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104906   ⟸   XM_021249247
- Peptide Label: isoform X10
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104905   ⟸   XM_021249246
- Peptide Label: isoform X9
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104897   ⟸   XM_021249238
- Peptide Label: isoform X2
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104899   ⟸   XM_021249240
- Peptide Label: isoform X4
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104902   ⟸   XM_021249243
- Peptide Label: isoform X6
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104904   ⟸   XM_021249245
- Peptide Label: isoform X8
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104903   ⟸   XM_021249244
- Peptide Label: isoform X7
- UniProtKB: G5ASM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000000948   ⟸   ENSHGLT00000000989
RefSeq Acc Id: ENSHGLP00000000945   ⟸   ENSHGLT00000000986
RefSeq Acc Id: ENSHGLP00000000947   ⟸   ENSHGLT00000000988
RefSeq Acc Id: ENSHGLP00000000949   ⟸   ENSHGLT00000000990
RefSeq Acc Id: ENSHGLP00000000946   ⟸   ENSHGLT00000000987
RefSeq Acc Id: ENSHGLP00000000950   ⟸   ENSHGLT00000000991


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000769 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000000987 ENTREZGENE
  ENSHGLT00000000989 ENTREZGENE
  ENSHGLT00000000990 ENTREZGENE
  ENSHGLT00000000991 ENTREZGENE
InterPro Kinectin UniProtKB/TrEMBL
  Rib_rcpt_KP UniProtKB/TrEMBL
NCBI Gene Ktn1 ENTREZGENE
PANTHER KINECTIN UniProtKB/TrEMBL
  KINECTIN UniProtKB/TrEMBL
Pfam Rib_recp_KP_reg UniProtKB/TrEMBL
UniProt G5ASM6 ENTREZGENE, UniProtKB/TrEMBL