KTN1 (kinectin 1) - Rat Genome Database

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Gene: KTN1 (kinectin 1) Chlorocebus sabaeus
Analyze
Symbol: KTN1
Name: kinectin 1
RGD ID: 18362130
Description: ENCODES a protein that exhibits kinesin binding (inferred); INVOLVED IN microtubule-based movement (inferred); protein transport (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinectin; LOC103229040; serine/arginine repetitive matrix protein 3-like; uncharacterized protein LOC103229040
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12432,769,740 - 32,871,650 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2432,797,736 - 32,872,219 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12432,769,740 - 32,871,650 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2432,797,736 - 32,872,219 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381455,580,207 - 55,684,584 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1455,559,072 - 55,701,526 (+)EnsemblGRCh38hg38GRCh38
GRCh371456,046,925 - 56,151,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361455,116,678 - 55,221,055 (+)NCBINCBI36Build 36hg18NCBI36
Build 341455,116,792 - 55,221,047NCBI
Celera1436,096,260 - 36,200,637 (+)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1436,231,668 - 36,314,068 (+)NCBIHuRef
CHM1_11455,985,265 - 56,089,654 (+)NCBICHM1_1
T2T-CHM13v2.01449,785,926 - 49,890,300 (+)NCBIT2T-CHM13v2.0
Ktn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391447,886,551 - 47,974,021 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1447,885,905 - 47,977,351 (+)EnsemblGRCm39 Ensembl
GRCm381447,648,274 - 47,736,564 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1447,648,448 - 47,739,894 (+)EnsemblGRCm38mm10GRCm38
MGSCv371448,283,431 - 48,356,239 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361446,585,656 - 46,658,434 (+)NCBIMGSCv36mm8
Celera1443,864,096 - 43,936,861 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1424.6NCBI
Ktn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81523,392,570 - 23,485,061 (+)NCBIGRCr8
mRatBN7.21520,913,665 - 21,002,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1520,914,642 - 21,002,578 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01524,465,761 - 24,552,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1524,479,761 - 24,553,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01528,400,126 - 28,489,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41523,633,479 - 23,722,293 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11523,662,379 - 23,701,610 (+)NCBI
Celera1521,306,945 - 21,390,146 (+)NCBICelera
Cytogenetic Map15p14NCBI
Ktn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546613,664,763 - 13,747,337 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546613,664,312 - 13,747,368 (-)NCBIChiLan1.0ChiLan1.0
KTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21556,696,902 - 56,801,597 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11455,913,416 - 56,018,111 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01436,162,612 - 36,266,941 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11454,456,984 - 54,539,472 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1454,467,238 - 54,539,472 (+)Ensemblpanpan1.1panPan2
KTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1831,352,623 - 31,457,715 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl831,352,465 - 31,457,536 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha831,118,763 - 31,223,807 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0831,609,120 - 31,717,285 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl831,608,868 - 31,717,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1831,213,759 - 31,318,168 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0831,291,255 - 31,395,935 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0831,656,354 - 31,761,647 (+)NCBIUU_Cfam_GSD_1.0
Ktn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864073,743,757 - 73,817,618 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936495374,051 - 442,142 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1184,881,550 - 185,152,975 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11184,881,555 - 184,990,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21205,433,058 - 205,541,074 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ktn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624884409,339 - 483,562 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624884365,312 - 484,007 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 16 60
Low 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007986754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037984015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037984016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037984017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037984018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037984019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037984020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037984021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000012678   ⟹   ENSCSAP00000010709
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2432,797,736 - 32,872,219 (+)Ensembl
RefSeq Acc Id: XM_007986757   ⟹   XP_007984948
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12432,769,740 - 32,871,650 (+)NCBI
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986759   ⟹   XP_007984950
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12432,769,792 - 32,871,650 (+)NCBI
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986760   ⟹   XP_007984951
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12432,769,794 - 32,871,650 (+)NCBI
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986762   ⟹   XP_007984953
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12432,769,740 - 32,871,650 (+)NCBI
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037984015   ⟹   XP_037839943
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605320,983,389 - 21,084,029 (+)NCBI
RefSeq Acc Id: XM_037984016   ⟹   XP_037839944
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605320,983,390 - 21,084,029 (+)NCBI
RefSeq Acc Id: XM_037984017   ⟹   XP_037839945
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBI
RefSeq Acc Id: XM_037984018   ⟹   XP_037839946
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605320,983,390 - 21,084,029 (+)NCBI
RefSeq Acc Id: XM_037984019   ⟹   XP_037839947
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBI
RefSeq Acc Id: XM_037984020   ⟹   XP_037839948
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605320,983,376 - 21,084,029 (+)NCBI
RefSeq Acc Id: XM_037984021   ⟹   XP_037839949
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605320,983,390 - 21,084,029 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007984948   ⟸   XM_007986757
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007984953   ⟸   XM_007986762
- Peptide Label: isoform X7
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007984950   ⟸   XM_007986759
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007984951   ⟸   XM_007986760
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010709   ⟸   ENSCSAT00000012678
RefSeq Acc Id: XP_037839947   ⟸   XM_037984019
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839945   ⟸   XM_037984017
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839948   ⟸   XM_037984020
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839943   ⟸   XM_037984015
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839944   ⟸   XM_037984016
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839946   ⟸   XM_037984018
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839949   ⟸   XM_037984021
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RQ20 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014591 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012678.1 UniProtKB/TrEMBL
InterPro Kinectin UniProtKB/TrEMBL
  Rib_rcpt_KP UniProtKB/TrEMBL
NCBI Gene KTN1 ENTREZGENE
PANTHER KINECTIN UniProtKB/TrEMBL
  PTHR18864 UniProtKB/TrEMBL
Pfam Rib_recp_KP_reg UniProtKB/TrEMBL
UniProt A0A0D9RQ20 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 KTN1  kinectin 1  LOC103229040  serine/arginine repetitive matrix protein 3-like  Data merged from RGD:18468265 737654 PROVISIONAL