Cd163 (CD163 molecule) - Rat Genome Database

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Gene: Cd163 (CD163 molecule) Heterocephalus glaber
Analyze
Symbol: Cd163
Name: CD163 molecule
RGD ID: 18903071
Description: ENCODES a protein that exhibits scaffold protein binding (ortholog); ASSOCIATED WITH Abdominal Obesity (ortholog); Actinobacillus Infections (ortholog); acute pancreatitis (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: scavenger receptor cysteine-rich type 1 protein M130
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,975,747 - 4,000,349 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,976,746 - 4,000,349 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Abdominal Obesity  (ISO)
Actinobacillus Infections  (ISO)
acute pancreatitis  (ISO)
Acute-On-Chronic Liver Failure  (ISO)
adult T-cell leukemia/lymphoma  (ISO)
Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis  (ISO)
brucellosis  (ISO)
carotid artery disease  (ISO)
Chronic Hepatitis B  (ISO)
Chronic Hepatitis C  (ISO)
COVID-19  (ISO)
cutaneous leishmaniasis  (ISO)
developmental and epileptic encephalopathy 21  (ISO)
diverticulitis of colon  (ISO)
Ebola hemorrhagic fever  (ISO)
ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, 9  (ISO)
Epstein-Barr virus infectious disease  (ISO)
Experimental Liver Cirrhosis  (ISO)
glomerulonephritis  (ISO)
Hantavirus hemorrhagic fever with renal syndrome  (ISO)
hemophagocytic lymphohistiocytosis  (ISO)
hepatocellular carcinoma  (ISO)
hidradenitis suppurativa  (ISO)
human immunodeficiency virus infectious disease  (ISO)
Human Viral Hepatitis  (ISO)
hyperglycemia  (ISO)
hyperinsulinism  (ISO)
Hyperphosphatemic Familial Tumoral Calcinosis 1  (ISO)
IgA glomerulonephritis  (ISO)
Insulin Resistance  (ISO)
Klippel-Feil syndrome 3  (ISO)
lepromatous leprosy  (ISO)
liver cirrhosis  (ISO)
Liver Failure  (ISO)
lung adenocarcinoma  (ISO)
lymphoproliferative syndrome 2  (ISO)
malaria  (ISO)
metabolic dysfunction-associated steatotic liver disease  (ISO)
Metabolic Syndrome  (ISO)
multisystem inflammatory syndrome in children  (ISO)
nasopharynx carcinoma  (ISO)
obesity  (ISO)
ovarian cancer  (ISO)
peroxisome biogenesis disorder 2B  (ISO)
pneumonia  (ISO)
Porcine Reproductive and Respiratory Syndrome  (ISO)
pulmonary tuberculosis  (ISO)
Sepsis  (ISO)
Spinal Cord Compression  (ISO)
Spontaneous Abortions  (ISO)
squamous cell carcinoma  (ISO)
Staphylococcal Infections  (ISO)
steatotic liver disease  (ISO)
Temtamy syndrome  (ISO)
traumatic brain injury  (ISO)
uveitis  (ISO)
visceral leishmaniasis  (ISO)
Whipple disease  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cd163
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,975,747 - 4,000,349 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,976,746 - 4,000,349 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CD163
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,470,811 - 7,503,777 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,470,811 - 7,503,893 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,623,407 - 7,656,373 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,514,676 - 7,547,681 (-)NCBINCBI36Build 36hg18NCBI36
Build 34127,515,020 - 7,547,639NCBI
Celera129,198,918 - 9,231,725 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef127,436,319 - 7,469,334 (-)NCBIHuRef
CHM1_1127,622,379 - 7,655,379 (-)NCBICHM1_1
T2T-CHM13v2.0127,484,506 - 7,517,489 (-)NCBIT2T-CHM13v2.0
Cd163
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,281,596 - 124,307,488 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,281,615 - 124,307,486 (+)EnsemblGRCm39 Ensembl
GRCm386124,304,636 - 124,330,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,304,656 - 124,330,527 (+)EnsemblGRCm38mm10GRCm38
MGSCv376124,254,669 - 124,280,545 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366124,270,275 - 124,296,146 (+)NCBIMGSCv36mm8
Celera6125,994,313 - 126,020,180 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.13NCBI
Cd163
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84158,770,751 - 158,804,146 (+)NCBIGRCr8
mRatBN7.24157,085,080 - 157,118,470 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,085,093 - 157,117,878 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4163,335,769 - 163,369,111 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,118,672 - 159,152,022 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04157,764,068 - 157,797,421 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04156,752,063 - 156,785,467 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4156,752,082 - 156,785,467 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04223,769,336 - 223,802,725 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,394,833 - 160,428,208 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14160,639,152 - 160,669,269 (+)NCBI
Celera4145,861,321 - 145,894,692 (+)NCBICelera
Cytogenetic Map4q42NCBI
CD163
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,051,446 - 13,084,564 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,048,219 - 13,081,235 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,616,714 - 7,649,768 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,779,244 - 7,812,351 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,775,343 - 7,810,023 (-)Ensemblpanpan1.1panPan2
CD163
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,669,757 - 37,700,746 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,669,827 - 37,753,106 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,915,837 - 8,946,494 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,023,513 - 38,054,487 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,023,571 - 38,105,604 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12737,898,042 - 37,928,650 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,939,566 - 37,969,977 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,402,538 - 8,433,169 (-)NCBIUU_Cfam_GSD_1.0
CD163
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,300,231 - 63,334,498 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,300,200 - 63,334,497 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CD163
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,501,562 - 7,536,332 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,501,150 - 7,536,295 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666063667,595 - 702,654 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002397   ⟹   ENSHGLP00000002348
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248603,975,747 - 4,000,349 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000002398   ⟹   ENSHGLP00000002349
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248603,975,747 - 4,000,349 (-)Ensembl
RefSeq Acc Id: XM_021248018   ⟹   XP_021103677
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,976,746 - 4,000,349 (-)NCBI
RefSeq Acc Id: XM_021248019   ⟹   XP_021103678
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,976,746 - 3,995,774 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021103677 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103678 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002348
Reference Protein Sequences
RefSeq Acc Id: XP_021103677   ⟸   XM_021248018
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021103678   ⟸   XM_021248019
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000002348   ⟸   ENSHGLT00000002397
RefSeq Acc Id: ENSHGLP00000002349   ⟸   ENSHGLT00000002398


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001784 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002397 ENTREZGENE
NCBI Gene Cd163 ENTREZGENE