MFAP3L (microfibril associated protein 3 like) - Rat Genome Database

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Gene: MFAP3L (microfibril associated protein 3 like) Chlorocebus sabaeus
Analyze
Symbol: MFAP3L
Name: microfibril associated protein 3 like
RGD ID: 18783235
Description: FOUND IN cell junction (inferred); cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: microfibrillar associated protein 3 like; microfibrillar-associated protein 3-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17116,193,751 - 116,239,954 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7116,193,729 - 116,233,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603796,133,843 - 96,173,936 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
MFAP3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17116,193,751 - 116,239,954 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7116,193,729 - 116,233,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603796,133,843 - 96,173,936 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MFAP3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384169,986,602 - 170,027,277 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4169,986,597 - 170,033,031 (-)EnsemblGRCh38hg38GRCh38
GRCh374170,907,753 - 170,947,546 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364171,144,323 - 171,184,004 (-)NCBINCBI36Build 36hg18NCBI36
Build 344171,287,254 - 171,301,869NCBI
Celera4168,240,037 - 168,279,718 (-)NCBICelera
Cytogenetic Map4q33NCBI
HuRef4166,662,586 - 166,702,266 (-)NCBIHuRef
CHM1_14170,884,199 - 170,923,880 (-)NCBICHM1_1
T2T-CHM13v2.04173,346,787 - 173,390,228 (-)NCBIT2T-CHM13v2.0
Mfap3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39861,085,859 - 61,129,765 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl861,085,861 - 61,129,763 (+)EnsemblGRCm39 Ensembl
GRCm38860,632,825 - 60,676,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl860,632,827 - 60,676,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv37863,111,657 - 63,155,528 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36863,525,021 - 63,564,891 (+)NCBIMGSCv36mm8
Celera863,211,655 - 63,257,450 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map830.86NCBI
Mfap3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81634,422,490 - 34,465,544 (-)NCBIGRCr8
mRatBN7.21629,411,643 - 29,454,665 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1629,415,849 - 29,430,863 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1633,010,729 - 33,025,743 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01636,444,460 - 36,459,478 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01632,645,272 - 32,660,305 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01632,734,059 - 32,777,091 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1632,738,265 - 32,753,278 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01632,571,990 - 32,587,004 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41632,751,464 - 32,766,478 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11632,751,539 - 32,766,553 (-)NCBI
Celera1629,409,761 - 29,424,775 (-)NCBICelera
Cytogenetic Map16p12NCBI
Mfap3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540336,401,565 - 36,439,768 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540336,402,339 - 36,439,768 (+)NCBIChiLan1.0ChiLan1.0
MFAP3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23167,768,687 - 167,809,601 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14168,124,561 - 168,166,016 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04162,211,860 - 162,253,294 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14174,282,190 - 174,322,706 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4174,282,190 - 174,302,529 (-)Ensemblpanpan1.1panPan2
MFAP3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12520,844,840 - 20,863,317 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2520,805,369 - 20,862,285 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2521,477,304 - 21,515,302 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02521,020,957 - 21,058,966 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2520,981,462 - 21,058,969 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12520,904,804 - 20,942,785 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02520,841,236 - 20,879,238 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02520,938,849 - 20,976,844 (-)NCBIUU_Cfam_GSD_1.0
Mfap3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494321,556,109 - 21,594,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365161,971,904 - 2,008,817 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365161,971,114 - 2,008,734 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MFAP3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1419,825,244 - 19,856,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11419,825,135 - 19,864,254 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21421,124,159 - 21,184,964 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Mfap3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247691,500,301 - 1,543,484 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247691,496,615 - 1,543,489 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 19 40
Low 17 20 20
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000001141   ⟹   ENSCSAP00000014929
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl7116,193,729 - 116,233,704 (-)Ensembl
RefSeq Acc Id: XM_008000250   ⟹   XP_007998441
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17116,197,629 - 116,234,423 (-)NCBI
Vero_WHO_p1.0NW_02366603796,133,843 - 96,173,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008000254   ⟹   XP_007998445
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17116,197,629 - 116,234,422 (-)NCBI
Vero_WHO_p1.0NW_02366603796,133,843 - 96,173,936 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037993769   ⟹   XP_037849697
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603796,133,843 - 96,173,934 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007998441 (Get FASTA)   NCBI Sequence Viewer  
  XP_007998445 (Get FASTA)   NCBI Sequence Viewer  
  XP_037849697 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014929.1
Reference Protein Sequences
RefSeq Acc Id: XP_007998441   ⟸   XM_008000250
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007998445   ⟸   XM_008000254
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000014929   ⟸   ENSCSAT00000001141
RefSeq Acc Id: XP_037849697   ⟸   XM_037993769
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S240 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003111 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001141.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene MFAP3L ENTREZGENE
PANTHER MICROFIBRILLAR-ASSOCIATED PROTEIN 3-LIKE UniProtKB/TrEMBL
  PTHR14340 UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0D9S240 ENTREZGENE, UniProtKB/TrEMBL