MFAP3L (microfibril associated protein 3 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: MFAP3L (microfibril associated protein 3 like) Sus scrofa
Analyze
Symbol: MFAP3L
Name: microfibril associated protein 3 like
RGD ID: 14238330
Description: FOUND IN cell junction (inferred); cytoplasm (inferred); membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: microfibrillar associated protein 3 like; microfibrillar-associated protein 3-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1419,825,244 - 19,856,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11419,825,135 - 19,864,254 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21421,124,159 - 21,184,964 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
MFAP3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1419,825,244 - 19,856,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11419,825,135 - 19,864,254 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21421,124,159 - 21,184,964 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MFAP3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384169,986,602 - 170,027,277 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4169,986,597 - 170,033,031 (-)EnsemblGRCh38hg38GRCh38
GRCh374170,907,753 - 170,947,546 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364171,144,323 - 171,184,004 (-)NCBINCBI36Build 36hg18NCBI36
Build 344171,287,254 - 171,301,869NCBI
Celera4168,240,037 - 168,279,718 (-)NCBICelera
Cytogenetic Map4q33NCBI
HuRef4166,662,586 - 166,702,266 (-)NCBIHuRef
CHM1_14170,884,199 - 170,923,880 (-)NCBICHM1_1
T2T-CHM13v2.04173,346,787 - 173,390,228 (-)NCBIT2T-CHM13v2.0
Mfap3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39861,085,859 - 61,129,765 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl861,085,861 - 61,129,763 (+)EnsemblGRCm39 Ensembl
GRCm38860,632,825 - 60,676,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl860,632,827 - 60,676,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv37863,111,657 - 63,155,528 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36863,525,021 - 63,564,891 (+)NCBIMGSCv36mm8
Celera863,211,655 - 63,257,450 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map830.86NCBI
Mfap3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81634,422,490 - 34,465,544 (-)NCBIGRCr8
mRatBN7.21629,411,643 - 29,454,665 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1629,415,849 - 29,430,863 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1633,010,729 - 33,025,743 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01636,444,460 - 36,459,478 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01632,645,272 - 32,660,305 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01632,734,059 - 32,777,091 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1632,738,265 - 32,753,278 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01632,571,990 - 32,587,004 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41632,751,464 - 32,766,478 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11632,751,539 - 32,766,553 (-)NCBI
Celera1629,409,761 - 29,424,775 (-)NCBICelera
Cytogenetic Map16p12NCBI
Mfap3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540336,401,565 - 36,439,768 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540336,402,339 - 36,439,768 (+)NCBIChiLan1.0ChiLan1.0
MFAP3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23167,768,687 - 167,809,601 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14168,124,561 - 168,166,016 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04162,211,860 - 162,253,294 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14174,282,190 - 174,322,706 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4174,282,190 - 174,302,529 (-)Ensemblpanpan1.1panPan2
MFAP3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12520,844,840 - 20,863,317 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2520,805,369 - 20,862,285 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2521,477,304 - 21,515,302 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02521,020,957 - 21,058,966 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2520,981,462 - 21,058,969 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12520,904,804 - 20,942,785 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02520,841,236 - 20,879,238 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02520,938,849 - 20,976,844 (-)NCBIUU_Cfam_GSD_1.0
Mfap3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494321,556,109 - 21,594,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365161,971,904 - 2,008,817 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365161,971,114 - 2,008,734 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MFAP3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17116,193,751 - 116,239,954 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7116,193,729 - 116,233,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603796,133,843 - 96,173,936 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mfap3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247691,500,301 - 1,543,484 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247691,496,615 - 1,543,489 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MFAP3L
1274 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2
Low 2 3 1 13 3
Below cutoff 4 1 2 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000010645   ⟹   ENSSSCP00000010369
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1419,825,244 - 19,856,897 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000055005   ⟹   ENSSSCP00000051630
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1419,825,115 - 20,034,763 (+)Ensembl
RefSeq Acc Id: XM_005670484   ⟹   XP_005670541
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11419,825,136 - 19,861,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073249   ⟹   XP_020928908
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11419,825,135 - 19,861,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073250   ⟹   XP_020928909
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11419,831,748 - 19,861,272 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002338663
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11419,825,136 - 19,864,254 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002338664
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11419,825,136 - 19,864,253 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020928908   ⟸   XM_021073249
- Peptide Label: isoform X2
- UniProtKB: A0A8D0QYF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005670541   ⟸   XM_005670484
- Peptide Label: isoform X1
- UniProtKB: A0A8D0QYF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928909   ⟸   XM_021073250
- Peptide Label: isoform X3
- UniProtKB: A0A8D0QYB2 (UniProtKB/TrEMBL),   A0A8D0QYF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010369   ⟸   ENSSSCT00000010645
RefSeq Acc Id: ENSSSCP00000051630   ⟸   ENSSSCT00000055005
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009709 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028058 UniProtKB/TrEMBL
  ENSSSCG00025014983 UniProtKB/TrEMBL
  ENSSSCG00070021960 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010645 ENTREZGENE
  ENSSSCT00000010645.5 UniProtKB/TrEMBL
  ENSSSCT00005044440.1 UniProtKB/TrEMBL
  ENSSSCT00025020036.1 UniProtKB/TrEMBL
  ENSSSCT00025020052.1 UniProtKB/TrEMBL
  ENSSSCT00070043660.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene MFAP3L ENTREZGENE
PANTHER MICROFIBRILLAR-ASSOCIATED PROTEIN 3-LIKE UniProtKB/TrEMBL
  PTHR14340 UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A4X1V6F8_PIG UniProtKB/TrEMBL
  A0A8D0JL10_PIG UniProtKB/TrEMBL
  A0A8D0QYB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QYF9 ENTREZGENE, UniProtKB/TrEMBL
  F1RIZ3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90175 ENTREZGENE