ZBTB44 (zinc finger and BTB domain containing 44) - Rat Genome Database

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Gene: ZBTB44 (zinc finger and BTB domain containing 44) Chlorocebus sabaeus
Analyze
Symbol: ZBTB44
Name: zinc finger and BTB domain containing 44
RGD ID: 18777611
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); Jacobsen Syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain-containing protein 44
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,317,527 - 121,382,608 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660434,725,695 - 4,800,607 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZBTB44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,317,527 - 121,382,608 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660434,725,695 - 4,800,607 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZBTB44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811130,226,677 - 130,314,917 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11130,226,677 - 130,314,917 (-)EnsemblGRCh38hg38GRCh38
GRCh3711130,096,572 - 130,184,812 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611129,608,335 - 129,689,817 (-)NCBINCBI36Build 36hg18NCBI36
Celera11127,264,450 - 127,352,483 (-)NCBICelera
Cytogenetic Map11q24.3NCBI
HuRef11126,049,248 - 126,084,496 (-)NCBIHuRef
CHM1_111129,982,379 - 130,070,414 (-)NCBICHM1_1
T2T-CHM13v2.011130,262,483 - 130,350,761 (-)NCBIT2T-CHM13v2.0
Zbtb44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39930,941,016 - 30,987,181 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl930,941,940 - 30,987,181 (+)EnsemblGRCm39 Ensembl
GRCm38931,029,720 - 31,075,885 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl931,030,644 - 31,075,885 (+)EnsemblGRCm38mm10GRCm38
MGSCv37930,838,229 - 30,883,470 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36930,780,209 - 30,819,776 (+)NCBIMGSCv36mm8
Celera928,289,333 - 28,335,081 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map916.56NCBI
Zbtb44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8837,724,237 - 37,782,220 (+)NCBIGRCr8
mRatBN7.2829,466,055 - 29,524,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl829,466,352 - 29,518,163 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx833,535,723 - 33,587,518 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0831,830,117 - 31,881,915 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0829,698,088 - 29,749,760 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0832,165,388 - 32,223,341 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl832,165,810 - 32,217,476 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0832,191,422 - 32,248,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4830,841,899 - 30,894,133 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1830,850,442 - 30,921,405 (+)NCBI
Celera830,928,937 - 30,979,901 (+)NCBICelera
Cytogenetic Map8q13NCBI
Zbtb44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541231,147,147 - 31,205,226 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541231,146,620 - 31,205,226 (-)NCBIChiLan1.0ChiLan1.0
ZBTB44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29130,904,391 - 130,992,454 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111132,015,072 - 132,103,110 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011125,037,645 - 125,125,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111128,929,819 - 129,017,533 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11128,929,826 - 128,964,790 (-)Ensemblpanpan1.1panPan2
ZBTB44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.154,574,604 - 4,641,431 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl54,574,243 - 4,635,066 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha54,634,397 - 4,702,362 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.054,534,775 - 4,601,607 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl54,535,991 - 4,595,515 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.154,568,897 - 4,635,604 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.054,577,604 - 4,644,363 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.054,604,461 - 4,671,747 (+)NCBIUU_Cfam_GSD_1.0
Zbtb44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947112,330,715 - 112,397,948 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365722,052,408 - 2,113,821 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365722,052,408 - 2,117,120 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl956,947,391 - 57,017,791 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1956,947,145 - 57,018,803 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2963,071,002 - 63,152,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Zbtb44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248124,631,468 - 4,694,218 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038004983   ⟹   XP_037860911
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660434,725,695 - 4,800,607 (+)NCBI
RefSeq Acc Id: XM_038004984   ⟹   XP_037860912
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660434,726,767 - 4,800,607 (+)NCBI
RefSeq Acc Id: XM_038004985   ⟹   XP_037860913
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660434,725,760 - 4,800,607 (+)NCBI
RefSeq Acc Id: XM_038004986   ⟹   XP_037860914
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660434,725,695 - 4,800,607 (+)NCBI
RefSeq Acc Id: XM_038004987   ⟹   XP_037860915
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660434,725,695 - 4,800,376 (+)NCBI
RefSeq Acc Id: XM_038004988   ⟹   XP_037860916
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660434,725,695 - 4,800,051 (+)NCBI
RefSeq Acc Id: XM_038004989   ⟹   XP_037860917
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660434,725,695 - 4,800,607 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_037860911   ⟸   XM_038004983
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037860914   ⟸   XM_038004986
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S4R9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860917   ⟸   XM_038004989
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037860915   ⟸   XM_038004987
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037860916   ⟸   XM_038004988
- Peptide Label: isoform X5
RefSeq Acc Id: XP_037860913   ⟸   XM_038004985
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S4R9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860912   ⟸   XM_038004984
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002180 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000195.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZBTB44 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 44 ISOFORM X1 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
  POZ domain UniProtKB/TrEMBL
UniProt A0A0D9S4R9 ENTREZGENE, UniProtKB/TrEMBL