ZNF521 (zinc finger protein 521) - Rat Genome Database

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Gene: ZNF521 (zinc finger protein 521) Chlorocebus sabaeus
Analyze
Symbol: ZNF521
Name: zinc finger protein 521
RGD ID: 18771137
Description: ENCODES a protein that exhibits chromatin insulator sequence binding (inferred); protein domain specific binding (inferred); INVOLVED IN neuron fate commitment (ortholog); ASSOCIATED WITH intellectual disability (ortholog); schizophrenia (ortholog); FOUND IN chromosome (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11855,189,003 - 55,482,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1855,188,366 - 55,482,211 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605029,929,664 - 30,222,618 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF521
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11855,189,003 - 55,482,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1855,188,366 - 55,482,211 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605029,929,664 - 30,222,618 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF521
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381825,061,924 - 25,352,166 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1825,061,924 - 25,352,190 (-)EnsemblGRCh38hg38GRCh38
GRCh371822,641,888 - 22,932,130 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361820,895,889 - 21,186,114 (-)NCBINCBI36Build 36hg18NCBI36
Build 341820,895,888 - 21,186,114NCBI
Celera1819,457,304 - 19,745,858 (-)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1819,498,620 - 19,787,560 (-)NCBIHuRef
CHM1_11822,568,594 - 22,858,896 (-)NCBICHM1_1
T2T-CHM13v2.01825,256,507 - 25,546,798 (-)NCBIT2T-CHM13v2.0
Zfp521
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391813,820,070 - 14,105,812 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1813,820,070 - 14,105,844 (-)EnsemblGRCm39 Ensembl
GRCm381813,687,013 - 13,972,749 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1813,687,013 - 13,972,787 (-)EnsemblGRCm38mm10GRCm38
MGSCv371813,845,522 - 14,131,242 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361813,831,384 - 14,115,932 (-)NCBIMGSCv36mm8
Celera1813,916,487 - 14,200,147 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map187.68NCBI
Zfp521
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,050,297 - 5,343,188 (-)NCBIGRCr8
mRatBN7.2184,775,952 - 5,068,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,787,295 - 5,068,458 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,005,649 - 5,287,716 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0185,793,291 - 6,075,378 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,052,734 - 5,334,363 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,022,042 - 5,315,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,032,029 - 5,314,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,006,330 - 5,165,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,986,104 - 5,148,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,986,099 - 5,271,638 (-)NCBI
Celera184,826,586 - 5,105,763 (-)NCBICelera
Cytogenetic Map18p13NCBI
Znf521
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540213,299,432 - 13,571,898 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540213,299,670 - 13,570,188 (-)NCBIChiLan1.0ChiLan1.0
ZNF521
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21742,492,748 - 42,784,198 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11828,185,342 - 28,476,796 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01818,319,311 - 18,611,564 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11821,930,832 - 22,220,607 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1822,062,675 - 22,220,607 (-)Ensemblpanpan1.1panPan2
ZNF521
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1763,146,696 - 63,421,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl763,146,690 - 63,421,792 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha762,588,683 - 62,863,819 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0763,196,796 - 63,473,255 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl763,195,842 - 63,473,243 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1762,869,901 - 63,144,909 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0762,883,806 - 63,158,788 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0763,187,769 - 63,463,157 (+)NCBIUU_Cfam_GSD_1.0
Znf521
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494459,217,012 - 59,486,169 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365504,330,695 - 4,572,028 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365504,329,911 - 4,599,052 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF521
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6109,833,614 - 110,124,798 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16109,833,610 - 110,122,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26102,988,148 - 103,009,488 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Znf521
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247707,025,544 - 7,264,606 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247707,025,678 - 7,264,481 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 34 28
Low 2 15 32
Below cutoff 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015900   ⟹   ENSCSAP00000013826
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1855,188,366 - 55,482,211 (+)Ensembl
RefSeq Acc Id: XM_007974407   ⟹   XP_007972598
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11855,189,003 - 55,482,150 (+)NCBI
Vero_WHO_p1.0NW_02366605029,929,694 - 30,222,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037982428   ⟹   XP_037838356
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605029,929,694 - 30,222,618 (+)NCBI
RefSeq Acc Id: XM_037982429   ⟹   XP_037838357
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605029,929,664 - 30,222,618 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007972598 (Get FASTA)   NCBI Sequence Viewer  
  XP_037838356 (Get FASTA)   NCBI Sequence Viewer  
  XP_037838357 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013826
  ENSCSAP00000013826.1
Reference Protein Sequences
RefSeq Acc Id: XP_007972598   ⟸   XM_007974407
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000013826   ⟸   ENSCSAT00000015900
RefSeq Acc Id: XP_037838357   ⟸   XM_037982429
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037838356   ⟸   XM_037982428
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017805 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015900.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF521 ENTREZGENE
PANTHER TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 423 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9RYY7 ENTREZGENE, UniProtKB/TrEMBL