Zfp521 (zinc finger protein 521) - Rat Genome Database

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Gene: Zfp521 (zinc finger protein 521) Rattus norvegicus
Analyze
Symbol: Zfp521
Name: zinc finger protein 521
RGD ID: 1307345
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein domain specific binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within neuron fate commitment. Predicted to be located in nucleoplasm. Orthologous to human ZNF521 (zinc finger protein 521); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC307579; Znf521
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,050,297 - 5,343,188 (-)NCBIGRCr8
mRatBN7.2184,775,952 - 5,068,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,787,295 - 5,068,458 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,005,649 - 5,287,716 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0185,793,291 - 6,075,378 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,052,734 - 5,334,363 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,022,042 - 5,315,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,032,029 - 5,314,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,006,330 - 5,165,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,986,104 - 5,148,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,986,099 - 5,271,638 (-)NCBI
Celera184,826,586 - 5,105,763 (-)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11984006   PMID:12393497   PMID:25834056   PMID:28707663  


Genomics

Comparative Map Data
Zfp521
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,050,297 - 5,343,188 (-)NCBIGRCr8
mRatBN7.2184,775,952 - 5,068,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,787,295 - 5,068,458 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,005,649 - 5,287,716 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0185,793,291 - 6,075,378 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,052,734 - 5,334,363 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,022,042 - 5,315,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,032,029 - 5,314,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,006,330 - 5,165,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,986,104 - 5,148,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,986,099 - 5,271,638 (-)NCBI
Celera184,826,586 - 5,105,763 (-)NCBICelera
Cytogenetic Map18p13NCBI
ZNF521
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381825,061,924 - 25,352,166 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1825,061,924 - 25,352,190 (-)EnsemblGRCh38hg38GRCh38
GRCh371822,641,888 - 22,932,130 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361820,895,889 - 21,186,114 (-)NCBINCBI36Build 36hg18NCBI36
Build 341820,895,888 - 21,186,114NCBI
Celera1819,457,304 - 19,745,858 (-)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1819,498,620 - 19,787,560 (-)NCBIHuRef
CHM1_11822,568,594 - 22,858,896 (-)NCBICHM1_1
T2T-CHM13v2.01825,256,507 - 25,546,798 (-)NCBIT2T-CHM13v2.0
Zfp521
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391813,820,070 - 14,105,812 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1813,820,070 - 14,105,844 (-)EnsemblGRCm39 Ensembl
GRCm381813,687,013 - 13,972,749 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1813,687,013 - 13,972,787 (-)EnsemblGRCm38mm10GRCm38
MGSCv371813,845,522 - 14,131,242 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361813,831,384 - 14,115,932 (-)NCBIMGSCv36mm8
Celera1813,916,487 - 14,200,147 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map187.68NCBI
Znf521
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540213,299,432 - 13,571,898 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540213,299,670 - 13,570,188 (-)NCBIChiLan1.0ChiLan1.0
ZNF521
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21742,492,748 - 42,784,198 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11828,185,342 - 28,476,796 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01818,319,311 - 18,611,564 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11821,930,832 - 22,220,607 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1822,062,675 - 22,220,607 (-)Ensemblpanpan1.1panPan2
ZNF521
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1763,146,696 - 63,421,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl763,146,690 - 63,421,792 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha762,588,683 - 62,863,819 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0763,196,796 - 63,473,255 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl763,195,842 - 63,473,243 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1762,869,901 - 63,144,909 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0762,883,806 - 63,158,788 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0763,187,769 - 63,463,157 (+)NCBIUU_Cfam_GSD_1.0
Znf521
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494459,217,012 - 59,486,169 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365504,330,695 - 4,572,028 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365504,329,911 - 4,599,052 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF521
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6109,833,614 - 110,124,798 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16109,833,610 - 110,122,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26102,988,148 - 103,009,488 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF521
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11855,189,003 - 55,482,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1855,188,366 - 55,482,211 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605029,929,664 - 30,222,618 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf521
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247707,025,544 - 7,264,606 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247707,025,678 - 7,264,481 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp521
1702 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:440
Count of miRNA genes:233
Interacting mature miRNAs:284
Transcripts:ENSRNOT00000022637
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat

Markers in Region
AU048195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2184,798,704 - 4,798,885 (+)MAPPERmRatBN7.2
Rnor_6.0185,044,260 - 5,044,440NCBIRnor6.0
Rnor_5.0185,018,561 - 5,018,741UniSTSRnor5.0
Celera184,837,981 - 4,838,161UniSTS
Cytogenetic Map18p13UniSTS
BE107765  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2184,899,434 - 4,899,598 (+)MAPPERmRatBN7.2
Rnor_6.0185,143,962 - 5,144,125NCBIRnor6.0
Rnor_5.0185,117,909 - 5,118,072UniSTSRnor5.0
RGSC_v3.4184,971,202 - 4,971,365UniSTSRGSC3.4
Celera184,938,454 - 4,938,617UniSTS
RH 3.4 Map1882.11UniSTS
Cytogenetic Map18p13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 2 2 2 2 63 12 24 3
Low 3 39 28 12 17 12 8 11 11 23 17 8 8
Below cutoff 26 26 26

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000022637   ⟹   ENSRNOP00000022637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,787,295 - 5,068,458 (-)Ensembl
Rnor_6.0 Ensembl185,032,029 - 5,314,511 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079682   ⟹   ENSRNOP00000068573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,803,284 - 5,068,458 (-)Ensembl
Rnor_6.0 Ensembl185,046,826 - 5,314,585 (-)Ensembl
RefSeq Acc Id: NM_001107403   ⟹   NP_001100873
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,061,918 - 5,343,043 (-)NCBI
mRatBN7.2184,787,295 - 5,068,447 (-)NCBI
Rnor_6.0185,032,029 - 5,314,511 (-)NCBI
Rnor_5.0185,006,330 - 5,165,477 (-)NCBI
RGSC_v3.4184,986,104 - 5,148,485 (-)RGD
Celera184,826,586 - 5,105,763 (-)RGD
Sequence:
RefSeq Acc Id: NM_001393860   ⟹   NP_001380789
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,061,918 - 5,343,054 (-)NCBI
mRatBN7.2184,787,295 - 5,068,458 (-)NCBI
RefSeq Acc Id: XM_063277447   ⟹   XP_063133517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,050,297 - 5,342,885 (-)NCBI
RefSeq Acc Id: XM_063277448   ⟹   XP_063133518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,050,297 - 5,342,885 (-)NCBI
RefSeq Acc Id: XM_063277449   ⟹   XP_063133519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,061,918 - 5,342,883 (-)NCBI
RefSeq Acc Id: XM_063277450   ⟹   XP_063133520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,050,297 - 5,343,188 (-)NCBI
RefSeq Acc Id: XM_063277452   ⟹   XP_063133522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,061,918 - 5,343,187 (-)NCBI
RefSeq Acc Id: XM_063277453   ⟹   XP_063133523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,061,918 - 5,343,188 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001100873   ⟸   NM_001107403
- Peptide Label: isoform 1
- UniProtKB: A6KLT4 (UniProtKB/TrEMBL),   A0A0G2JT53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068573   ⟸   ENSRNOT00000079682
RefSeq Acc Id: ENSRNOP00000022637   ⟸   ENSRNOT00000022637
RefSeq Acc Id: NP_001380789   ⟸   NM_001393860
- Peptide Label: isoform 2
- UniProtKB: D3ZQM2 (UniProtKB/TrEMBL),   A0A0G2JT53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133520   ⟸   XM_063277450
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133518   ⟸   XM_063277448
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133517   ⟸   XM_063277447
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063133523   ⟸   XM_063277453
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063133522   ⟸   XM_063277452
- Peptide Label: isoform X5
- UniProtKB: A6KLT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133519   ⟸   XM_063277449
- Peptide Label: isoform X3
- UniProtKB: A6KLT4 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JT53-F1-model_v2 AlphaFold A0A0G2JT53 1-1325 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700644
Promoter ID:EPDNEW_R11167
Type:single initiation site
Name:Zfp521_1
Description:zinc finger protein 521
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0185,314,416 - 5,314,476EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307345 AgrOrtholog
BioCyc Gene G2FUF-8332 BioCyc
Ensembl Genes ENSRNOG00000016874 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022637 ENTREZGENE
  ENSRNOT00000022637.7 UniProtKB/TrEMBL
  ENSRNOT00000079682 ENTREZGENE
  ENSRNOT00000079682.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:307579 UniProtKB/TrEMBL
NCBI Gene 307579 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN-RELATED UniProtKB/TrEMBL
  LD43035P UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 142 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 692 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PhenoGen Zfp521 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016874 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2JT53 ENTREZGENE, UniProtKB/TrEMBL
  A6KLT4 ENTREZGENE, UniProtKB/TrEMBL
  A6KLT5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQM2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-19 Zfp521  zinc finger protein 521  Znf521  zinc finger protein 521  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Znf521  zinc finger protein 521  Zfp521  zinc finger protein 521   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfp521  zinc finger protein 521   Zfp521_predicted  zinc finger protein 521 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfp521_predicted  zinc finger protein 521 (predicted)      Symbol and Name status set to approved 70820 APPROVED