ERICH6B (glutamate rich 6B) - Rat Genome Database

Name: ERICH6B
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ERICH6B (glutamate rich 6B) Chlorocebus sabaeus

Analyze

Symbol:

ERICH6B

Name:

glutamate rich 6B

RGD ID:

18676102

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

glutamate-rich protein 6B; protein FAM194B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ERICH6B (glutamate rich 6B)	NCBI	Ortholog
Mus musculus (house mouse):	Erich6b (glutamate rich 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Erich6b (glutamate-rich 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Erich6b (glutamate rich 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ERICH6B (glutamate rich 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ERICH6B (glutamate rich 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Erich6b (glutamate rich 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ERICH6B (glutamate rich 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Erich6b (glutamate rich 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	23,625,698 - 23,693,586 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	23,625,790 - 23,674,020 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	20,377,458 - 20,432,097 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Comparative Map Data

ERICH6B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	23,625,698 - 23,693,586 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	23,625,790 - 23,674,020 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	20,377,458 - 20,432,097 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ERICH6B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	45,541,294 - 45,615,739 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	45,534,522 - 45,615,739 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	46,115,429 - 46,189,874 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	45,013,433 - 45,087,875 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	27,170,108 - 27,244,549 (-)	NCBI		Celera
Cytogenetic Map	13	q14.13	NCBI
HuRef	13	26,911,668 - 26,986,113 (-)	NCBI		HuRef
CHM1_1	13	46,084,372 - 46,158,786 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	44,762,627 - 44,837,047 (-)	NCBI		T2T-CHM13v2.0

Erich6b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	75,879,662 - 75,934,165 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	75,879,689 - 75,934,157 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	75,642,222 - 75,696,725 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	75,642,249 - 75,696,717 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	76,042,066 - 76,066,944 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	74,376,414 - 74,401,292 (+)	NCBI		MGSCv36	mm8
Celera	14	73,144,181 - 73,168,998 (+)	NCBI		Celera
Cytogenetic Map	14	D3	NCBI
cM Map	14	40.28	NCBI

Erich6b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	57,384,509 - 57,423,543 (+)	NCBI		GRCr8
mRatBN7.2	15	50,979,066 - 51,014,394 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	15	57,691,875 - 57,754,684 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	15	61,401,695 - 61,460,759 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	56,523,651 - 56,542,553 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	15	50,585,979 - 50,648,431 (+)	NCBI		Celera
Cytogenetic Map	15	q11	NCBI

Erich6b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955518	3,279,721 - 3,333,159 (-)	NCBI	ChiLan1.0	ChiLan1.0

ERICH6B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	45,768,880 - 45,843,314 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	36,822,921 - 36,897,573 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	27,409,374 - 27,483,814 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ERICH6B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	5,485,832 - 5,542,217 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	5,485,891 - 5,542,216 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	5,474,925 - 5,531,318 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	5,603,799 - 5,660,025 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	5,603,858 - 5,660,024 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	5,385,612 - 5,442,002 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	5,448,778 - 5,504,943 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	5,454,151 - 5,510,550 (+)	NCBI		UU_Cfam_GSD_1.0

Erich6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	155,737,589 - 155,780,600 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936857	158,921 - 202,872 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ERICH6B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	11	21,674,478 - 21,754,947 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	22,021,206 - 22,052,091 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Erich6b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624748	9,446,611 - 9,492,620 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low		14	12
Below cutoff	1	4	24

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007960333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007960334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037986721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000015862 ⟹ ENSCSAP00000013790

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	3	23,625,790 - 23,674,020 (-)	Ensembl

RefSeq Acc Id:

XM_037986721 ⟹ XP_037842649

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666057	20,377,458 - 20,432,097 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_037842649	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000013790.1

RefSeq Acc Id:

ENSCSAP00000013790 ⟸ ENSCSAT00000015862

RefSeq Acc Id:	XP_037842649 ⟸ XM_037986721
- UniProtKB:	A0A0D9RYV1 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000017768	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000015862.1	UniProtKB/TrEMBL
InterPro	FAM194_C	UniProtKB/TrEMBL
NCBI Gene	ERICH6B	ENTREZGENE
PANTHER	GLUTAMATE-RICH PROTEIN 6B	UniProtKB/TrEMBL
	SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20	UniProtKB/TrEMBL
Pfam	FAM194	UniProtKB/TrEMBL
UniProt	A0A0D9RYV1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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